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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 4
  • mitochondrion 8
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, mitochondrion, nucleus, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:plastid
 nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 21766870 doi
S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g075470.1.1 Tomato cytosol 31.49 93.67
KRH41307 Soybean mitochondrion 93.62 93.22
TraesCS1D01G452300.1 Wheat cytosol 60.43 87.65
Bra033163.1-P Field mustard plastid 79.15 79.15
CDY25267 Canola plastid 79.15 79.15
CDX94238 Canola plastid 79.15 79.15
AT4G23900.1 Thale cress mitochondrion 79.15 78.48
AT4G11010.1 Thale cress mitochondrion, plastid 79.15 78.15
PGSC0003DMT400031997 Potato extracellular 78.72 77.73
Solyc08g082430.2.1 Tomato plastid 78.72 77.73
PGSC0003DMT400014828 Potato mitochondrion 76.6 77.59
CDX86826 Canola mitochondrion 77.87 77.54
Bra035260.1-P Field mustard mitochondrion 77.87 77.54
Solyc08g008340.2.1 Tomato plastid 76.6 76.92
VIT_02s0025g01500.t01 Wine grape plastid 76.6 76.6
CDY47613 Canola mitochondrion 75.74 75.11
CDY03508 Canola mitochondrion, plastid 75.32 74.68
Bra013742.1-P Field mustard mitochondrion 75.32 74.68
GSMUA_Achr1P11560_001 Banana mitochondrion 72.34 71.73
GSMUA_Achr4P01100_001 Banana mitochondrion 71.06 70.17
Zm00001d009774_P001 Maize mitochondrion 70.64 69.75
Os05t0595400-01 Rice plastid 70.64 69.46
TraesCS1A01G444300.1 Wheat mitochondrion, plastid 70.64 68.88
Zm00001d039221_P001 Maize mitochondrion 69.36 68.78
KXG22725 Sorghum mitochondrion 70.21 67.9
TraesCS1B01G478800.1 Wheat plastid 70.21 66.53
HORVU1Hr1G095400.2 Barley plastid 70.21 66.53
Zm00001d004713_P001 Maize endoplasmic reticulum 51.49 63.35
KRH48835 Soybean endoplasmic reticulum, nucleus 37.87 59.73
KRH66485 Soybean endoplasmic reticulum 36.6 57.72
Zm00001d024444_P001 Maize plastid 54.47 44.29
KRH57193 Soybean plastid 39.57 41.33
KRH16591 Soybean mitochondrion 34.04 41.03
KRH03909 Soybean plastid 39.57 40.97
AT4G23895.3 Thale cress cytosol 78.72 39.61
KRH33600 Soybean cytosol 11.91 35.9
KRG89746 Soybean plastid 34.04 35.71
KRH47632 Soybean cytosol 16.6 32.23
CDY40857 Canola endoplasmic reticulum, golgi 40.43 28.36
KRH06204 Soybean endoplasmic reticulum, extracellular 20.0 21.96
Protein Annotations
KEGG:00230+2.7.4.6KEGG:00240+2.7.4.6KEGG:00983+2.7.4.6EntrezGene:100527475Gene3D:3.30.70.141MapMan:6.3.2.4
EMBL:ACUP02003347EMBL:BT092320UniProt:C6T4F9EnsemblPlantsGene:GLYMA_05G216700GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004550GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006165GO:GO:0006183GO:GO:0006228GO:GO:0006241
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016301GO:GO:0016310
GO:GO:0016740InterPro:IPR036850EnsemblPlants:KRH60038ProteinID:KRH60038ProteinID:KRH60038.1HAMAP:MF_00451
InterPro:NDK-like_domInterPro:NDK-like_dom_sfInterPro:Nucleoside_diP_kinaseInterPro:Nucleoside_diP_kinase_ASPFAM:PF00334PRINTS:PR01243
ScanProsite:PS00469PANTHER:PTHR11349PANTHER:PTHR11349:SF91MetaCyc:PWY-6545MetaCyc:PWY-7176MetaCyc:PWY-7184
MetaCyc:PWY-7187MetaCyc:PWY-7197MetaCyc:PWY-7198MetaCyc:PWY-7205MetaCyc:PWY-7210MetaCyc:PWY-7220
MetaCyc:PWY-7221MetaCyc:PWY-7222MetaCyc:PWY-7224MetaCyc:PWY-7226MetaCyc:PWY-7227SMART:SM00562
SUPFAM:SSF54919UniParc:UPI0001AB3D20SEG:seg:::
Description
hypothetical protein
Coordinates
chr5:-:39696647..39699812
Molecular Weight (calculated)
25213.1 Da
IEP (calculated)
9.582
GRAVY (calculated)
-0.102
Length
235 amino acids
Sequence
(BLAST)
001: MASQVCKAAS RAARSLLSAS RASHGRAVGA ATAVSLSCKV PLFYGKNGSG SGSASSSSSS WISGALALPA AAYMFQDQEV RAAELERTFI AIKPDGVQRG
101: LISEIISRFE RKGYKLVGIK VVIPSKEFAQ KHYHDLKERP FFDGLCDFLS SGPVIAMVWE GQGVISYGRK LIGATDPQKS EPGTIRGDLA VVVGRNIIHG
201: SDGPETAKDE IKLWFKPEEL VSFTSNAEKW VYGVN
Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)
001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN
Arabidopsis Description
NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.