Factsheet for TraesCS1B01G478800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22160430
mitochondrion: 23895732
golgi: 25769308
unclear: 25769308
nucleus: 26579155

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 23895732 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G452300.1	Wheat	cytosol	64.92	99.38
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	90.73	93.36
Solyc06g075470.1.1	Tomato	cytosol	29.44	92.41
HORVU1Hr1G095400.2	Barley	plastid	89.92	89.92
Os05t0595400-01	Rice	plastid	81.05	84.1
Zm00001d009774_P001	Maize	mitochondrion	77.02	80.25
KXG22725	Sorghum	mitochondrion	77.82	79.42
Zm00001d039221_P001	Maize	mitochondrion	75.81	79.32
VIT_02s0025g01500.t01	Wine grape	plastid	67.74	71.49
PGSC0003DMT400014828	Potato	mitochondrion	66.53	71.12
CDX94238	Canola	plastid	67.34	71.06
Solyc08g082430.2.1	Tomato	plastid	68.15	71.01
CDY25267	Canola	plastid	66.94	70.64
Bra033163.1-P	Field mustard	plastid	66.94	70.64
GSMUA_Achr4P01100_001	Banana	mitochondrion	67.74	70.59
PGSC0003DMT400031997	Potato	extracellular	67.74	70.59
Solyc08g008340.2.1	Tomato	plastid	66.53	70.51
CDX86826	Canola	mitochondrion	66.94	70.34
Bra035260.1-P	Field mustard	mitochondrion	66.94	70.34
KRH60038	Soybean	mitochondrion	66.53	70.21
GSMUA_Achr1P11560_001	Banana	mitochondrion	66.94	70.04
AT4G23900.1	Thale cress	mitochondrion	66.13	69.2
AT4G11010.1	Thale cress	mitochondrion, plastid	66.13	68.91
KRH41307	Soybean	mitochondrion	65.32	68.64
Zm00001d004713_P001	Maize	endoplasmic reticulum	52.82	68.59
Bra013742.1-P	Field mustard	mitochondrion	64.11	67.09
CDY03508	Canola	mitochondrion, plastid	64.11	67.09
CDY47613	Canola	mitochondrion	64.11	67.09
TraesCS1B01G230300.1	Wheat	cytosol, plastid	35.48	58.67
Zm00001d024444_P001	Maize	plastid	54.44	46.71
TraesCS4B01G102400.2	Wheat	cytosol	35.08	45.08
TraesCS5B01G098300.2	Wheat	cytosol	31.05	44.77
AT4G23895.3	Thale cress	cytosol	66.53	35.33
TraesCS7B01G282400.1	Wheat	cytosol	11.69	34.94
CDY40857	Canola	endoplasmic reticulum, golgi	36.69	27.16

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0003674
GO:GO:0003824	GO:GO:0004550	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228
GO:GO:0006241	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF91
SMART:SM00562	SUPFAM:SSF54919	EnsemblPlantsGene:TraesCS1B01G478800	EnsemblPlants:TraesCS1B01G478800.1	TIGR:cd04413	SEG:seg

Description

No Description!

Coordinates

chr1B:-:686933093..686936932

Molecular Weight (calculated)

26770.9 Da

IEP (calculated)

8.989

GRAVY (calculated)

-0.105

Length

248 amino acids

Sequence
(BLAST)

001: MSSSSKLFQS ACKAARSFLA SSSAPAAAPR AASSVLADGR NAALATLANL GRNSTLPAAY AHHLHTNAAA SSHAYAWLAA IPAAVYMLQD QEVHAAEMER
101: TFIAIKPDGV QRGLISEIVS RFERKGYKLV AIKLVVPSKQ FAEKHYHDLK ERPFFNGLCD FLSSGPVLAM VWEGEGVIKY GRKLIGATDP SKSEPGTIRG
201: DLAVVVGRNI IHGSDGPETA KDEIALWFQP KELVSYTSNE EKWIYGVN

Best Arabidopsis Sequence Match ( AT4G11010.1 )
(BLAST)

001: MSSQICRSAS KAAKSLLSSA KNARFFSEGR AIGAAAAVSA SGKIPLYASN FARSSGSGVA SKSWITGLLA LPAAAYMIQD QEVLAAEMER TFIAIKPDGV
101: QRGLISEIIS RFERKGFKLV GIKVIVPSKD FAQKHYHDLK ERPFFNGLCD FLSSGPVIAM VWEGDGVIRY GRKLIGATDP QKSEPGTIRG DLAVTVGRNI
201: IHGSDGPETA KDEISLWFKP QELVSYTSNS EKWLYGDN

Arabidopsis Description

NDPK3Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UTZ0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.