Factsheet for Zm00001d039221_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G452300.1	Wheat	cytosol	64.14	93.83
Solyc06g075470.1.1	Tomato	cytosol	30.8	92.41
KXG22725	Sorghum	mitochondrion	92.83	90.53
Zm00001d009774_P001	Maize	mitochondrion	89.87	89.5
Os05t0595400-01	Rice	plastid	78.06	77.41
TraesCS1A01G444300.1	Wheat	mitochondrion, plastid	77.22	75.93
TraesCS1B01G478800.1	Wheat	plastid	79.32	75.81
HORVU1Hr1G095400.2	Barley	plastid	78.9	75.4
VIT_02s0025g01500.t01	Wine grape	plastid	71.31	71.91
PGSC0003DMT400014828	Potato	mitochondrion	69.62	71.12
Solyc08g008340.2.1	Tomato	plastid	70.04	70.94
Zm00001d004713_P001	Maize	endoplasmic reticulum	56.96	70.68
Solyc08g082430.2.1	Tomato	plastid	70.89	70.59
PGSC0003DMT400031997	Potato	extracellular	70.89	70.59
AT4G23900.1	Thale cress	mitochondrion	70.04	70.04
CDX94238	Canola	plastid	69.2	69.79
GSMUA_Achr4P01100_001	Banana	mitochondrion	70.04	69.75
GSMUA_Achr1P11560_001	Banana	mitochondrion	69.62	69.62
CDX86826	Canola	mitochondrion	69.2	69.49
Bra035260.1-P	Field mustard	mitochondrion	69.2	69.49
KRH60038	Soybean	mitochondrion	68.78	69.36
CDY25267	Canola	plastid	68.78	69.36
Bra033163.1-P	Field mustard	plastid	68.78	69.36
AT4G11010.1	Thale cress	mitochondrion, plastid	68.78	68.49
CDY47613	Canola	mitochondrion	67.51	67.51
Bra013742.1-P	Field mustard	mitochondrion	67.51	67.51
CDY03508	Canola	mitochondrion, plastid	67.09	67.09
KRH41307	Soybean	mitochondrion	66.24	66.53
Zm00001d029968_P001	Maize	plastid	37.55	59.73
Zm00001d021526_P001	Maize	cytosol, extracellular	34.6	53.59
Zm00001d024444_P001	Maize	plastid	59.92	49.13
Zm00001d023833_P001	Maize	plastid	37.55	37.55
AT4G23895.3	Thale cress	cytosol	70.04	35.55
Zm00001d050827_P003	Maize	endoplasmic reticulum	23.21	29.41
CDY40857	Canola	endoplasmic reticulum, golgi	38.4	27.16

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	UniProt:A0A1D6MEM8
ProteinID:AQK89087.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	InterPro:IPR036850	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase
InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF91
SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI0001AB3D19	EnsemblPlantsGene:Zm00001d039221	EnsemblPlants:Zm00001d039221_P001	EnsemblPlants:Zm00001d039221_T001
SEG:seg	:	:	:	:	:

Description

Nucleoside diphosphate kinase

Coordinates

chr6:+:173160217..173162244

Molecular Weight (calculated)

25695.8 Da

IEP (calculated)

9.534

GRAVY (calculated)

-0.138

Length

237 amino acids

Sequence
(BLAST)

001: MSGSASRKLF QAARSIVLSA SQRSSFSVLA AEGRTAALAN FGRKILPSAC SYHRQGSHAA SGWGAIAAAV PAAVYMLQDQ EAHAAEMERT FIAIKPDGVQ
101: RGLISEIVNR FERKGYKLVA IKLIVPSKGF AEKHYHDLKE RPFFNGLCDF LSSGPVLAMV WEGEGVIKYG RKLIGATDPQ KSEPGTIRGD LGVVVGRNII
201: HGSDGPETAK DEIALWFEPK ELVSYTSNAE KWVYGVN

Best Arabidopsis Sequence Match ( AT4G23900.1 )
(BLAST)

001: MSSQICRSAS RAARSLLSSA KNARFFSEGR AIGAASVVHA TGKVPQYASN FGKSGSGFVS NSWITGLLAL PAAAFMLQDQ EALAAEMERT FIAIKPDGVQ
101: RGLISEIITR FERKGYKLVG IKVMVPSKGF AQKHYHDLKE RPFFNGLCNF LSSGPVVAMV WEGEGVIRYG RKLIGATDPQ KSEPGTIRGD LAVVVGRNII
201: HGSDGPETAK DEISLWFKPE ELVSYTSNAE KWIYGQN

Arabidopsis Description

NDK4Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LAH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.