Factsheet for PGSC0003DMT400080042

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g089970.2.1	Tomato	extracellular, plastid	99.32	99.32
GSMUA_Achr11P...	Banana	cytosol	82.43	85.92
CDX93161	Canola	cytosol	36.49	85.71
KRH48835	Soybean	endoplasmic reticulum, nucleus	85.81	85.23
CDY71669	Canola	cytosol, plasma membrane	85.14	85.14
Bra027579.1-P	Field mustard	cytosol	84.46	84.46
VIT_15s0021g01330.t01	Wine grape	cytosol, extracellular	84.46	84.46
CDY13081	Canola	cytosol	84.46	84.46
KRH66485	Soybean	endoplasmic reticulum	84.46	83.89
Bra030844.1-P	Field mustard	cytosol	83.78	83.78
GSMUA_Achr8P15010_001	Banana	cytosol	83.78	83.78
GSMUA_Achr5P18300_001	Banana	cytosol, unclear	83.78	83.78
CDY42375	Canola	cytosol	83.78	83.78
Solyc09g055420.1.1	Tomato	cytosol, unclear	66.22	83.76
TraesCS1B01G230300.1	Wheat	cytosol, plastid	84.46	83.33
TraesCS1A01G217200.1	Wheat	golgi	84.46	83.33
CDY10545	Canola	cytosol	83.11	83.11
TraesCS1D01G219000.1	Wheat	plastid	84.46	82.78
HORVU1Hr1G055440.1	Barley	cytosol, plasma membrane	83.11	82.0
EER91919	Sorghum	cytosol	82.43	81.88
Zm00001d029968_P001	Maize	plastid	81.76	81.21
AT4G09320.1	Thale cress	cytosol, mitochondrion, nucleus	81.76	81.21
Os10t0563700-01	Rice	extracellular	81.76	80.13
CDY61716	Canola	cytosol	74.32	78.57
Bra013108.1-P	Field mustard	cytosol	43.24	76.19
EER99399	Sorghum	cytosol	76.35	75.33
Os07t0492000-01	Rice	extracellular	75.0	74.5
Zm00001d021526_P001	Maize	cytosol, extracellular	76.35	73.86
TraesCS4A01G213400.2	Wheat	unclear	73.65	56.48
TraesCS4B01G102400.2	Wheat	cytosol	72.97	55.96
TraesCS4D01G099200.2	Wheat	cytosol	72.3	55.44
PGSC0003DMT400039453	Potato	cytosol	59.46	53.99
KXG23408	Sorghum	plastid	25.0	46.84
PGSC0003DMT400069352	Potato	mitochondrion	62.84	41.52
PGSC0003DMT400014828	Potato	mitochondrion	57.43	36.64
PGSC0003DMT400031997	Potato	extracellular	57.43	35.71
PGSC0003DMT400011148	Potato	endoplasmic reticulum	33.11	28.49

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	EntrezGene:102578209	Gene3D:3.30.70.141	MapMan:6.3.2.4
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0070301	InterPro:IPR036850	UniProt:M1D2W7	HAMAP:MF_00451	InterPro:NDK-like_dom
InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS	PFAM:PF00334	EnsemblPlantsGene:PGSC0003DMG400031166	PGSC:PGSC0003DMG400031166
EnsemblPlants:PGSC0003DMT400080042	PRINTS:PR01243	ScanProsite:PS00469	PANTHER:PTHR11349	PANTHER:PTHR11349:SF66	SMART:SM00562
SUPFAM:SSF54919	UniParc:UPI00005AB17A	RefSeq:XP_006347985.1	:	:	:

Description

Nucleoside diphosphate kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400031166]

Coordinates

chr1:+:69049967..69051659

Molecular Weight (calculated)

16222.6 Da

IEP (calculated)

6.809

GRAVY (calculated)

0.056

Length

148 amino acids

Sequence
(BLAST)

001: MEQTFIMIKP DGVQRGLVGE IIGRFEKKGF SLKGLKLITV DRAFAEKHYA DLSAKPFFNG LVEYIVSGPV VAMVWEGKGV VATGRKIIGA TNPLESAAGT
101: IRGDFAIDIG RNVIHGSDAV ESARKEIALW FPEGIAEWQS SLHSWIYE

Best Arabidopsis Sequence Match ( AT4G09320.1 )
(BLAST)

001: MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV VLTGRKIIGA TNPAASEPGT
101: IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET

Arabidopsis Description

NDK1Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UXQ6]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.