Factsheet for HORVU3Hr1G050990.2

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

vacuole: 16581873
vacuole: 19391183

msms PMID: 16581873 doi

A Endler, S Meyer, S Schelbert, T Schneider, W Weschke, SW Peters, F Keller, S Baginsky, E Martinoia, UG Schmidt

University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.

msms PMID: 19391183 doi

T Schneider, M Schellenberg, S Meyer, F Keller, P Gehrig, K Riedel, Y Lee, L Eberl, E Martinoia

Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland. Thomas.Schneider@botinst.uzh.ch

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G042690.2
HORVU4Hr1G089910.8
HORVU5Hr1G024250.1
HORVU6Hr1G093960.1
HORVU7Hr1G120120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28715.1	HORVU6Hr1G093960.1	AT5G08330.1	21798944
AT3G28715.1	HORVU1Hr1G042690.2	AT5G23130.1	21798944
AT3G28715.1	HORVU4Hr1G089910.8	AT5G23130.1	21798944
AT3G28715.1	HORVU7Hr1G120120.1	AT5G23130.1	21798944
AT3G28715.1	HORVU5Hr1G024250.1	AT5G63310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G213200.1	Wheat	cytosol	98.58	98.58
TraesCS3A01G210400.2	Wheat	cytosol, golgi	98.58	98.58
TraesCS3B01G241000.1	Wheat	cytosol	98.58	98.58
EES03178	Sorghum	cytosol	95.44	95.44
Os01t0587000-01	Rice	plasma membrane	95.16	95.16
GSMUA_Achr1P11740_001	Banana	cytosol	80.63	92.79
GSMUA_Achr6P35890_001	Banana	cytosol	80.06	92.13
KRH01133	Soybean	cytosol	91.45	91.45
KRH40128	Soybean	endoplasmic reticulum	91.45	91.45
VIT_14s0108g00080.t01	Wine grape	cytosol, extracellular	90.6	90.6
PGSC0003DMT400072522	Potato	cytosol, mitochondrion	90.31	90.31
Solyc10g081530.1.1	Tomato	nucleus, plastid	90.31	90.31
AT3G28710.1	Thale cress	cytosol	88.03	88.03
AT3G28715.1	Thale cress	cytosol	87.75	87.75
CDX95344	Canola	cytosol	20.23	77.17
Zm00001d011238_P001	Maize	cytosol	46.72	63.81
CDY17733	Canola	mitochondrion	12.25	31.62

Protein Annotations

Gene3D:1.10.132.50	Gene3D:1.20.1690.10	MapMan:24.1.1.1.3	UniProt:A0A287L129	InterPro:ATPase_V0-cplx_csu/dsu	InterPro:ATPase_V0-cplx_dsu
InterPro:ATPase_su_C-like	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0033179	EnsemblPlantsGene:HORVU3Hr1G050990
EnsemblPlants:HORVU3Hr1G050990.2	InterPro:IPR035067	PFAM:PF01992	PIRSF:PIRSF018497	PANTHER:PTHR11028	PANTHER:PTHR11028:SF0
SUPFAM:SSF103486	UniParc:UPI000B48845E	InterPro:V-type_ATPase_suC	:	:	:

Description

V-type proton ATPase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287L129]

Coordinates

chrchr3H:+:367106752..367112011

Molecular Weight (calculated)

40778.9 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.201

Length

351 amino acids

Sequence
(BLAST)

001: MYSWEMLSFN IHDGFLEAIV RGNRSGLLTQ ADYNNLCQCE TLDDIKMHLS ATEYGPYLQN EPSPLHTTTI VEKCTLKLVD EYKHMLCQAN EPLSTFLQYI
101: TYGHMIDNVV LIVTGTLHER DVNELLEKCH PLGMFDSIAS LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI MRNTLYKAYL QDFYKFCAKL
201: GGATADIMCN LLSFEADRRA VNITINSIGT ELTRDDRRKL YSNFGLLFPY GHEELAVCED VDQVRGVMEK YPPYQSIFAK ISYGESQMLD KAFYEEEVKR
301: LRLSFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK NRVHDSVVTI F

Best Arabidopsis Sequence Match ( AT3G28710.1 )
(BLAST)

001: MYGFEALTFN IHGGYLEAIV RGHRAGLLTT ADYNNLCQCE NLDDIKMHLS ATKYGSYLQN EPSPLHTTTI VEKCTLKLVD DYKHMLCQAT EPMSTFLEYI
101: RYGHMIDNVV LIVTGTLHER DVQELIEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL APYFSECLTS EDLDDMNIEI MRNTLYKAYL EDFYKFCQKL
201: GGATAEIMSD LLAFEADRRA VNITINSIGT ELTREDRKKL YSNFGLLYPY GHEELAICED IDQVRGVMEK YPPYQAIFSK MSYGESQMLD KAFYEEEVRR
301: LCLAFEQQFH YAVFFAYMRL REQEIRNLMW ISECVAQNQK SRIHDSVVYM F

Arabidopsis Description

VHA-D1V-type proton ATPase subunit d1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.