Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g008230.2.1 | Tomato | nucleus | 51.12 | 91.97 |
| Solyc04g009180.1.1 | Tomato | nucleus | 37.5 | 63.16 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 35.49 | 62.35 |
| CDY40752 | Canola | cytosol | 24.11 | 61.02 |
| Os03t0422702-00 | Rice | cytosol, plastid | 16.74 | 59.52 |
| KRG89108 | Soybean | nucleus, plastid | 30.58 | 59.05 |
| Bra029366.1-P | Field mustard | cytosol | 22.99 | 58.52 |
| KRH36141 | Soybean | nucleus | 31.7 | 57.72 |
| AT5G23280.1 | Thale cress | nucleus | 31.92 | 57.2 |
| CDY46951 | Canola | nucleus | 29.24 | 56.96 |
| KRH40904 | Soybean | nucleus | 30.13 | 56.49 |
| KRH40902 | Soybean | nucleus | 30.13 | 56.25 |
| CDY40799 | Canola | nucleus | 28.79 | 56.09 |
| Zm00001d018530_P001 | Maize | plastid | 25.67 | 55.56 |
| Os02t0828566-01 | Rice | nucleus | 29.24 | 55.51 |
| KRG90619 | Soybean | nucleus | 29.69 | 54.96 |
| AT5G08330.1 | Thale cress | nucleus | 28.79 | 53.97 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 23.44 | 53.03 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 28.79 | 52.87 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 23.21 | 52.79 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 23.21 | 52.53 |
| EES07800 | Sorghum | plastid | 28.35 | 52.26 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 29.69 | 49.81 |
| PGSC0003DMT400055541 | Potato | plastid | 14.06 | 31.34 |
| PGSC0003DMT400052203 | Potato | nucleus | 15.85 | 30.6 |
| PGSC0003DMT400067150 | Potato | nucleus, plastid | 21.43 | 29.36 |
| PGSC0003DMT400090661 | Potato | nucleus | 16.52 | 26.52 |
| PGSC0003DMT400094424 | Potato | cytosol | 13.62 | 24.9 |
| PGSC0003DMT400083148 | Potato | nucleus | 21.88 | 23.9 |
| PGSC0003DMT400001613 | Potato | nucleus | 21.65 | 23.43 |
| PGSC0003DMT400088049 | Potato | cytosol | 14.06 | 23.33 |
| PGSC0003DMT400008728 | Potato | nucleus | 18.75 | 22.64 |
| PGSC0003DMT400023981 | Potato | nucleus | 19.64 | 22.62 |
| PGSC0003DMT400062327 | Potato | nucleus | 16.96 | 20.77 |
| PGSC0003DMT400058534 | Potato | nucleus | 16.07 | 19.25 |
| PGSC0003DMT400095626 | Potato | plastid | 11.83 | 18.93 |
| PGSC0003DMT400064164 | Potato | nucleus | 22.32 | 18.73 |
Protein Annotations
| EntrezGene:102604852 | EntrezGene:102605188 | MapMan:15.5.19 | MapMan:27.1.5.3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR017887 | UniProt:M1BCL5 | PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400016363 | PGSC:PGSC0003DMG400016363 |
| EnsemblPlants:PGSC0003DMT400042166 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF7 | SUPFAM:SSF50729 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI0002955102 | SEG:seg | : | : | : |
Description
Transcription factor TCP7 [Source:PGSC_GENE;Acc:PGSC0003DMG400016363]
Coordinates
chr1:-:3912688..3922676
Molecular Weight (calculated)
49073.9 Da
IEP (calculated)
9.194
GRAVY (calculated)
-0.188
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSVEPNGA VLLDSTAGSG GGVANSNGAL TVKKQPAKDR HSKVDGRGRR IRMPIVCAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS
101: FSTVSVSLRN SISSVSASAP VDHKLPSPSL LHPLISPAPF LLGKRLRSED DDNGSGDKDV VPSAGFWAVP ARPDFGQVWS FAAPPPEISH SAAMISHPSR
201: LLQQQMEEAS VGRVGNYFPI AQGHLNLLAS LSGSEEGLQT YSPTMLLGLF KNVTECVLDP PKVVQFWTPH ARAFFYICPV ESLGEVQTKG TIYLSNIRMV
301: FVAKNPRDNF IAFDIPLLFV HGEKLNQPIF FCKNISGYVN PVIPANANED SIIPHSFKIM FKECDCEAFI PLVFKLIGKV RRRYRRSRAK HRVDPLHEAT
401: KTPVDEMTRY AYVDPNDSTS IFLQLQPTPK SRLGCRMNQS QPTAETSI
101: FSTVSVSLRN SISSVSASAP VDHKLPSPSL LHPLISPAPF LLGKRLRSED DDNGSGDKDV VPSAGFWAVP ARPDFGQVWS FAAPPPEISH SAAMISHPSR
201: LLQQQMEEAS VGRVGNYFPI AQGHLNLLAS LSGSEEGLQT YSPTMLLGLF KNVTECVLDP PKVVQFWTPH ARAFFYICPV ESLGEVQTKG TIYLSNIRMV
301: FVAKNPRDNF IAFDIPLLFV HGEKLNQPIF FCKNISGYVN PVIPANANED SIIPHSFKIM FKECDCEAFI PLVFKLIGKV RRRYRRSRAK HRVDPLHEAT
401: KTPVDEMTRY AYVDPNDSTS IFLQLQPTPK SRLGCRMNQS QPTAETSI
001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Arabidopsis Description
TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.