Factsheet for PGSC0003DMT400000919

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038558
PGSC0003DMT400062327
PGSC0003DMT400069942
PGSC0003DMT400076408

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	PGSC0003DMT400076408	AT1G28360.1	21798944
AT4G36690.1	PGSC0003DMT400069942	AT2G39760.1	21798944
AT4G36690.1	PGSC0003DMT400038558	AT3G50670.1	21798944
AT4G36690.1	PGSC0003DMT400062327	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008750.1.1	Tomato	nucleus	94.05	93.74
PGSC0003DMT400040069	Potato	cytosol	44.3	86.17
CDY12868	Canola	mitochondrion	30.08	79.82
CDY67096	Canola	mitochondrion	31.74	77.73
Bra040973.1-P	Field mustard	nucleus	34.21	76.1
CDX75589	Canola	mitochondrion	43.14	73.52
GSMUA_Achr4P16510_001	Banana	nucleus	56.69	72.67
HORVU5Hr1G090000.2	Barley	nucleus	46.28	70.53
CDY40492	Canola	nucleus	17.19	69.33
PGSC0003DMT400033041	Potato	nucleus	62.98	68.53
AT1G60830.2	Thale cress	nucleus	12.56	68.47
VIT_04s0023g01450.t01	Wine grape	nucleus	62.64	67.08
CDY12869	Canola	nucleus	53.55	65.32
CDY55407	Canola	nucleus	12.07	65.18
CDY40481	Canola	nucleus	55.54	65.12
Bra027119.1-P	Field mustard	nucleus	52.73	64.97
TraesCS4D01G143400.3	Wheat	nucleus	57.52	63.39
GSMUA_Achr4P11020_001	Banana	nucleus	60.17	63.19
Bra031477.1-P	Field mustard	nucleus	61.82	62.96
CDY46188	Canola	nucleus	61.82	62.96
AT1G60900.1	Thale cress	nucleus	60.99	62.65
HORVU4Hr1G029030.3	Barley	nucleus	56.86	62.55
KRH56450	Soybean	nucleus	62.48	62.48
CDY03767	Canola	nucleus	62.31	62.11
CDY24773	Canola	nucleus	56.69	61.91
Bra010569.1-P	Field mustard	nucleus	56.69	61.91
CDY35472	Canola	nucleus	56.2	61.82
KRH64800	Soybean	nucleus	60.17	60.67
EES08974	Sorghum	nucleus	54.05	60.0
TraesCS4B01G145600.4	Wheat	nucleus	56.2	59.75
TraesCS4D01G150000.4	Wheat	nucleus	56.2	59.34
AT4G36690.1	Thale cress	nucleus	56.03	59.16
TraesCSU01G068100.3	Wheat	nucleus	56.69	59.14
TraesCS4A01G171800.3	Wheat	nucleus	56.53	58.86
CDY40493	Canola	nucleus	27.11	58.36
TraesCS4A01G165000.4	Wheat	nucleus	56.36	58.29
Os11t0636900-02	Rice	nucleus	55.04	58.01
Bra040940.1-P	Field mustard	nucleus	52.56	56.58
HORVU4Hr1G038850.14	Barley	nucleus	55.7	55.7
PGSC0003DMT400057795	Potato	mitochondrion	25.95	55.67
CDY66742	Canola	nucleus	51.9	55.38
HORVU5Hr1G089980.2	Barley	nucleus, plastid	51.9	55.18
CDY30313	Canola	nucleus	53.22	54.76
KXG28995	Sorghum	nucleus	54.21	54.67
Bra031341.1-P	Field mustard	nucleus	22.64	54.58
CDY55589	Canola	mitochondrion	22.48	54.18
TraesCS5A01G366000.1	Wheat	nucleus	53.55	53.47
Bra010656.1-P	Field mustard	mitochondrion, plastid	22.31	53.36
TraesCS5D01G375600.1	Wheat	nucleus	53.22	52.7
TraesCS5B01G368400.1	Wheat	nucleus	50.08	48.1
KXG29128	Sorghum	nucleus	45.45	43.44
TraesCS2A01G122400.1	Wheat	nucleus	11.24	41.72
TraesCS5A01G040700.1	Wheat	cytosol	11.24	40.96
TraesCS2B01G144600.1	Wheat	nucleus	10.91	40.49
TraesCS5B01G041900.1	Wheat	nucleus	10.91	39.76
TraesCS5D01G071700.1	Wheat	nucleus	9.42	33.14
TraesCS5B01G067400.1	Wheat	nucleus	9.26	29.95
TraesCS5D01G071600.1	Wheat	nucleus	9.26	29.95
Zm00001d007635_P004	Maize	nucleus	23.8	20.45

Protein Annotations

EntrezGene:102584094	MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
UniProt:M0ZHK4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400000344	PGSC:PGSC0003DMG400000344	EnsemblPlants:PGSC0003DMT400000919
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI000296D776	RefSeq:XP_006353517.1	RefSeq:XP_006353518.1
RefSeq:XP_006353519.1	SEG:seg	:	:	:	:

Description

Splicing factor U2af large subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG400000344]

Coordinates

chr12:-:3793368..3802131

Molecular Weight (calculated)

66896.7 Da

IEP (calculated)

7.476

GRAVY (calculated)

-0.943

Length

605 amino acids

Sequence
(BLAST)

001: MDSNENGLTQ LTPSDTGGDN EIAGVDNGEE EHNSSKRRSS SKPSSHDYEG ERKSSRSRDR EGEKGRDKDR GRSRDKDRDR EKDRDRRHSD RSERSRTKGR
101: DDDANVSDGG PESREYWQKD YDRERDERHK HRSKSYERER EERHRHRSKS YDKDREESDR HRSKSYDKDR EDRHGCRSHS RGTSSHRSRS RSGSRSRSKS
201: KRVSGFDMAP PTSALLSGAP ALIASAGLLP GTAPAIPGML PNMFPLASGP LGAIPVLPVQ AMTQQATRHA RRVYVGGLPP TANEQSVATY FNHVMSAIGG
301: NTAGPGDAVV NVYINHEKKF AFVEMRSVEE ASNAMALDGI IFEGTQVKVR RPTDYNPSLA ATLGPSQPNP NLNLAAVGLS PGSTGGLEGP DRIFVGGLPY
401: YFTEAQIREL LESFGPLRGF NLVKDKETGN SKGYAFCVYA DVSVTDIACT ALNGIKMGDK TLTVRRASQG TLQPKPEQEI VLMHAQQQIA LQRLMLQPGG
501: PPTKVLCLTH VVSPDELKDD EDYEDIVEDM RMECGKFGNL VNLVIPRPRP DGEPTPGVGK VFLEYADVES SSRAQQGLNG RKFGGNEVVA VFYPENKFSE
601: GDYEG

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.