CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12868	Canola	mitochondrion	42.14	91.67
CDY55407	Canola	nucleus	20.56	91.07
CDY40492	Canola	nucleus	26.41	87.33
AT1G60830.2	Thale cress	nucleus	18.55	82.88
Bra027119.1-P	Field mustard	nucleus	81.65	82.48
PGSC0003DMT400040069	Potato	cytosol	49.4	78.78
CDY40481	Canola	nucleus	80.44	77.33
CDY67096	Canola	mitochondrion	38.1	76.52
CDX75589	Canola	mitochondrion	51.21	71.55
HORVU5Hr1G090000.2	Barley	nucleus	54.23	67.76
GSMUA_Achr4P16510_001	Banana	nucleus	64.31	67.58
CDY40493	Canola	nucleus	37.5	66.19
AT1G60900.1	Thale cress	nucleus	76.21	64.18
CDY46188	Canola	nucleus	76.61	63.97
CDY55589	Canola	mitochondrion	31.85	62.95
CDY03767	Canola	nucleus	77.02	62.93
VIT_13s0139g00410.t01	Wine grape	cytosol	8.47	61.76
Solyc02g085570.2.1	Tomato	nucleus	65.73	58.42
Solyc02g062920.2.1	Tomato	nucleus	65.93	58.39
PGSC0003DMT400033041	Potato	nucleus	65.32	58.27
HORVU4Hr1G029030.3	Barley	nucleus	64.31	58.0
TraesCS4D01G143400.3	Wheat	nucleus	64.11	57.92
CDY35472	Canola	nucleus	63.71	57.45
CDY24773	Canola	nucleus	64.11	57.4
EES08974	Sorghum	nucleus	62.5	56.88
GSMUA_Achr4P11020_001	Banana	nucleus	65.52	56.42
KRH64800	Soybean	nucleus	66.53	55.0
TraesCS4D01G150000.4	Wheat	nucleus	63.51	54.97
TraesCS4B01G145600.4	Wheat	nucleus	62.9	54.83
TraesCSU01G068100.3	Wheat	nucleus	63.71	54.48
TraesCS4A01G171800.3	Wheat	nucleus	63.51	54.22
KRH56450	Soybean	nucleus	65.93	54.05
Solyc12g008750.1.1	Tomato	nucleus	65.73	53.71
TraesCS4A01G165000.4	Wheat	nucleus	63.31	53.68
PGSC0003DMT400000919	Potato	nucleus	65.32	53.55
Os11t0636900-02	Rice	nucleus	60.69	52.44
CDY66742	Canola	nucleus	59.68	52.2
HORVU4Hr1G038850.14	Barley	nucleus	61.9	50.74
KXG28995	Sorghum	nucleus	61.09	50.5
HORVU5Hr1G089980.2	Barley	nucleus, plastid	57.46	50.09
CDY30313	Canola	nucleus	59.27	50.0
TraesCS5A01G366000.1	Wheat	nucleus	58.87	48.18
TraesCS5D01G375600.1	Wheat	nucleus	58.27	47.3
TraesCS5B01G368400.1	Wheat	nucleus	57.06	44.92
KXG29128	Sorghum	nucleus	51.21	40.13
VIT_13s0139g00390.t01	Wine grape	plasma membrane	11.69	37.18
TraesCS2A01G122400.1	Wheat	nucleus	12.1	36.81
TraesCS2B01G144600.1	Wheat	nucleus	11.9	36.2
TraesCS5B01G041900.1	Wheat	nucleus	11.9	35.54
TraesCS5A01G040700.1	Wheat	cytosol	11.69	34.94
TraesCS5D01G071700.1	Wheat	nucleus	10.48	30.23
TraesCS5B01G067400.1	Wheat	nucleus	10.28	27.27
TraesCS5D01G071600.1	Wheat	nucleus	10.08	26.74
Zm00001d007635_P004	Maize	nucleus	24.6	17.33
CDX84685	Canola	nucleus	9.27	12.37
CDX79530	Canola	nucleus	18.35	7.56
CDX84686	Canola	nucleus	8.47	4.68

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:A0A078FIQ1	UniProt:A0A078FIQ1	EnsemblPlants:CDY12869	ProteinID:CDY12869
ProteinID:CDY12869.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00070525001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI0004EE77DF
SEG:seg	:	:	:	:	:

Description

BnaA09g14050DBnaA09g14050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIQ1]

Coordinates

chrLK032028:+:39620..43026

Molecular Weight (calculated)

53897.5 Da

IEP (calculated)

5.655

GRAVY (calculated)

-0.485

Length

496 amino acids

Sequence
(BLAST)

001: MSYDEANGDE NNNEDENCVA LESSPFNSLG GEHSKSRQDV ENESSRSRDR GRNSRDRDRE VDRHRRDRHS RERSERDDHH HTRSRSKRVS GFDMPPPSSA
101: MLAPTTVAAA AGQVPSVLAT PNIPGMFHNV LAMVPNQQLG ALPLLPVQAM TQQATRHARR VYVGGLPPTA NEQSVATFFS QVMSAVGGNT AGPGDAVVNV
201: YINHEKKFAF VEMRSVEEAS NAMALDGIIL EGVPVKVKRP TDYNPSLAAA LGPSQPNPNL NLAAVGFSSG STGGLEGPDR LFVGGIPYYL TEDQIRELLE
301: SFGPLRGFNL VKDRETGNSM GYAFCVFQDP SVTDIACAAL NGIKMGNKTL TVRRAVQGAI QPKPEQEDIL LHAQQQIALQ VCRLMLQPGG TPTKIVCLTQ
401: VVTANVLGDD KEYEDIMEDM RLEGGKFGNL VNVVIPRPNA DHDSQPGVGK VFLEYADLDG AAKARSGMNG RKFDGNQVVA VYYPENKYAQ GDYEAC

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.