Factsheet for Solyc02g085570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g060030.2.1
Solyc02g077840.1.1
Solyc02g085420.2.1
Solyc03g006800.1.1
Solyc05g052960.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	Solyc02g077840.1.1	AT1G28360.1	21798944
AT4G36690.1	Solyc05g052960.2.1	AT2G39760.1	21798944
AT4G36690.1	Solyc02g085420.2.1	AT3G50670.1	21798944
AT4G36690.1	Solyc01g060030.2.1	AT5G49400.1	21798944
AT4G36690.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033041	Potato	nucleus	92.65	92.99
CDY12868	Canola	mitochondrion	33.33	81.58
CDY67096	Canola	mitochondrion	35.84	80.97
Solyc02g062920.2.1	Tomato	nucleus	80.47	80.18
CDX75589	Canola	mitochondrion	49.1	77.18
VIT_04s0023g01450.t01	Wine grape	nucleus	75.63	74.69
GSMUA_Achr4P16510_001	Banana	nucleus	62.01	73.31
Bra040973.1-P	Field mustard	nucleus	35.13	72.06
HORVU5Hr1G090000.2	Barley	nucleus	49.64	69.77
CDY35472	Canola	nucleus	67.03	68.0
AT1G60830.2	Thale cress	nucleus	13.44	67.57
GSMUA_Achr4P11020_001	Banana	nucleus	69.71	67.53
CDY24773	Canola	nucleus	66.67	67.15
Bra010569.1-P	Field mustard	nucleus	66.67	67.15
CDY40492	Canola	nucleus	17.92	66.67
HORVU4Hr1G029030.3	Barley	nucleus	65.41	66.36
TraesCS4D01G143400.3	Wheat	nucleus	64.87	65.94
CDY12869	Canola	nucleus	58.42	65.73
AT4G36690.1	Thale cress	nucleus	67.03	65.27
CDY55407	Canola	nucleus	13.08	65.18
KRH64800	Soybean	nucleus	69.89	65.0
AT1G60900.1	Thale cress	nucleus	68.46	64.86
Bra027119.1-P	Field mustard	nucleus	56.81	64.56
CDY40481	Canola	nucleus	59.68	64.53
EES08974	Sorghum	nucleus	62.9	64.4
KRH56450	Soybean	nucleus	69.18	63.8
Bra040940.1-P	Field mustard	nucleus	63.26	62.81
CDY66742	Canola	nucleus	63.44	62.43
CDY30313	Canola	nucleus	65.77	62.41
TraesCS4D01G150000.4	Wheat	nucleus	63.8	62.13
Solyc12g008750.1.1	Tomato	nucleus	67.56	62.11
TraesCSU01G068100.3	Wheat	nucleus	64.52	62.07
TraesCS4A01G171800.3	Wheat	nucleus	64.52	61.96
TraesCS4B01G145600.4	Wheat	nucleus	62.72	61.51
Bra031477.1-P	Field mustard	nucleus	64.52	60.61
CDY46188	Canola	nucleus	64.52	60.61
TraesCS4A01G165000.4	Wheat	nucleus	63.26	60.34
Os11t0636900-02	Rice	nucleus	61.29	59.58
CDY03767	Canola	nucleus	64.7	59.47
CDY40493	Canola	nucleus	29.39	58.36
KXG28995	Sorghum	nucleus	62.01	57.67
HORVU4Hr1G038850.14	Barley	nucleus	62.01	57.19
CDY55589	Canola	mitochondrion	24.73	54.98
HORVU5Hr1G089980.2	Barley	nucleus, plastid	55.91	54.83
Bra031341.1-P	Field mustard	nucleus	24.19	53.78
Bra010656.1-P	Field mustard	mitochondrion, plastid	24.37	53.75
TraesCS5D01G375600.1	Wheat	nucleus	57.53	52.54
TraesCS5A01G366000.1	Wheat	nucleus	56.45	51.98
TraesCS5B01G368400.1	Wheat	nucleus	54.84	48.57
KXG29128	Sorghum	nucleus	46.77	41.23
TraesCS5B01G041900.1	Wheat	nucleus	12.19	40.96
TraesCS2A01G122400.1	Wheat	nucleus	11.83	40.49
TraesCS5A01G040700.1	Wheat	cytosol	12.01	40.36
TraesCS2B01G144600.1	Wheat	nucleus	11.29	38.65
TraesCS5D01G071700.1	Wheat	nucleus	10.04	32.56
TraesCS5D01G071600.1	Wheat	nucleus	9.86	29.41
TraesCS5B01G067400.1	Wheat	nucleus	9.68	28.88
Zm00001d007635_P004	Maize	nucleus	27.42	21.73
Solyc09g090420.2.1	Tomato	nucleus	17.03	8.6

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0000243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008187	GO:GO:0008380
GO:GO:0009987	GO:GO:0016607	GO:GO:0030628	GO:GO:0071004	GO:GO:0089701	InterPro:IPR000504
InterPro:IPR012677	UniProt:K4BB69	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc02g085570.2
EnsemblPlants:Solyc02g085570.2.1	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI000276922D	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:48401006..48407036

Molecular Weight (calculated)

62448.6 Da

IEP (calculated)

7.327

GRAVY (calculated)

-0.972

Length

558 amino acids

Sequence
(BLAST)

001: MQEYEGNGED IENNGSSPYS DSKSQHTSRD PEKERGSSRS REKEREKGRD KDRDRDRNRD RDRDRDRGKE RDKDRDRDRE REKDRDRHHR DRHRDRSDRR
101: ERIRDRDEDD LQRTRDYDRR RDNDKDREDR QRHKPSSRGR SEHRSRSRSR SPSKSKRISG FDMAPPTSAL LSGATDVAGQ VPGTTNPSIP GMFSNMFPLA
201: AGQFGALPIM PVQAMTQQAT RHARRVYVGG LPPTANEQSV ATFFSHVMYA IGGNTAGPGD AVVNVYINHE KKFAFVEMRS VEEASNAMAL DGVIFEGGPV
301: KVRRPSDYNP SLAATLGPSQ PSPNLNLAAV GLTPGSSGGL EGPDRIFVGG LPYYFTESQI RELLESFGQL RGFDLVKDRE TGNSKGYAFC VYQDVSVTDI
401: ACAALNGIKM GDKTLTVRRA NQGTTQPNPE QESVLLHAQQ QIALQRFMLQ PGALATKVLC LTEVVSVDEL KDDDDYQDIL EDMRIECGKF GALLNVVIPR
501: PNPNGEPTPG LGKVFLEYAD VDSSSKARQG LNGRKFGGNQ VIAVFYPENK FSEGDYEA

Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.