Factsheet for HORVU4Hr1G029030.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G030660.5
HORVU1Hr1G046870.5
HORVU1Hr1G067160.1
HORVU2Hr1G064920.1
HORVU5Hr1G080210.1
HORVU5Hr1G117990.1
HORVU7Hr1G097780.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	HORVU1Hr1G067160.1	AT1G28360.1	21798944
AT4G36690.1	HORVU2Hr1G064920.1	AT2G39760.1	21798944
AT4G36690.1	HORVU1Hr1G030660.5	AT3G50670.1	21798944
AT4G36690.1	HORVU1Hr1G046870.5	AT3G50670.1	21798944
AT4G36690.1	HORVU7Hr1G097780.1	AT5G49400.1	21798944
AT4G36690.1	HORVU5Hr1G080210.1	AT5G51910.1	21798944
AT4G36690.1	HORVU5Hr1G117990.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G143400.3	Wheat	nucleus	93.82	93.99
TraesCSU01G068100.3	Wheat	nucleus	90.73	86.03
TraesCS4A01G171800.3	Wheat	nucleus	90.73	85.89
PGSC0003DMT400040069	Potato	cytosol	45.09	79.74
CDY67096	Canola	mitochondrion	35.27	78.54
CDY12868	Canola	mitochondrion	32.36	78.07
EES08974	Sorghum	nucleus	76.91	77.61
Zm00001d048655_P012	Maize	extracellular, nucleus	76.0	77.55
HORVU5Hr1G090000.2	Barley	nucleus	55.45	76.83
CDX75589	Canola	mitochondrion	47.27	73.24
GSMUA_Achr4P16510_001	Banana	nucleus	62.36	72.67
Bra040973.1-P	Field mustard	nucleus	35.64	72.06
AT1G60830.2	Thale cress	nucleus	13.82	68.47
CDY55407	Canola	nucleus	13.45	66.07
Solyc02g085570.2.1	Tomato	nucleus	66.36	65.41
VIT_04s0023g01450.t01	Wine grape	nucleus	67.09	65.31
GSMUA_Achr4P11020_001	Banana	nucleus	68.0	64.93
PGSC0003DMT400033041	Potato	nucleus	65.45	64.75
CDY40492	Canola	nucleus	17.64	64.67
CDY12869	Canola	nucleus	58.0	64.31
HORVU4Hr1G038850.14	Barley	nucleus	70.36	63.97
CDY40481	Canola	nucleus	59.09	62.98
CDY35472	Canola	nucleus	62.36	62.36
Solyc02g062920.2.1	Tomato	nucleus	63.45	62.32
CDY24773	Canola	nucleus	62.73	62.27
Bra010569.1-P	Field mustard	nucleus	62.73	62.27
VIT_13s0139g00410.t01	Wine grape	cytosol	7.64	61.76
Bra027119.1-P	Field mustard	nucleus	54.55	61.1
HORVU5Hr1G089980.2	Barley	nucleus, plastid	62.36	60.28
AT1G60900.1	Thale cress	nucleus	64.18	59.93
AT4G36690.1	Thale cress	nucleus	62.18	59.69
Bra031477.1-P	Field mustard	nucleus	64.18	59.43
CDY46188	Canola	nucleus	64.18	59.43
KRH64800	Soybean	nucleus	64.73	59.33
Bra040940.1-P	Field mustard	nucleus	59.82	58.54
CDY03767	Canola	nucleus	64.36	58.32
CDY66742	Canola	nucleus	59.64	57.85
KRH56450	Soybean	nucleus	63.27	57.52
PGSC0003DMT400000919	Potato	nucleus	62.55	56.86
Solyc12g008750.1.1	Tomato	nucleus	62.36	56.51
CDY40493	Canola	nucleus	28.36	55.52
CDY30313	Canola	nucleus	59.09	55.27
CDY55589	Canola	mitochondrion	23.82	52.19
Bra010656.1-P	Field mustard	mitochondrion, plastid	23.64	51.38
Bra031341.1-P	Field mustard	nucleus	23.27	51.0
KXG29128	Sorghum	nucleus	54.73	47.55
VIT_13s0139g00390.t01	Wine grape	plasma membrane	10.36	36.54

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	UniProt:A0A287NPA6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:HORVU4Hr1G029030
EnsemblPlants:HORVU4Hr1G029030.3	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI000B4734AE	SEG:seg	:	:

Description

U2 snRNP auxiliary factor large subunit [Source:UniProtKB/TrEMBL;Acc:A0A287NPA6]

Coordinates

chrchr4H:+:182786365..182791822

Molecular Weight (calculated)

61334.7 Da

IEP (calculated)

7.842

GRAVY (calculated)

-0.894

Length

550 amino acids

Sequence
(BLAST)

001: MADDNGGGGG GGDHVSEGAR PEDDTHTREE GLSKSRDRDR EKEKDRERHR DRDRDRGRDR DRGRDRDLDK DRDRDKDRDR HQRHHREKRE HRDRPDDHDR
101: HRSRDSERRR DRERDGHHRH RSRSRSRSRG RDDHRSRSQS KSKRVSGFDL GPTAQSVVPQ FPTIPTPSQL PGSSIPGMFP NMLPFAVGQF NPLIMQPQAM
201: TQQHIFPQAT RHARRVYVGG LPPSANEQSV AIYFNQVMAA IGGNTAGPGD AVLNVYINHD KKFAFVEMRS VEEASNAMAL DGILFEGAPV KVRRPTDYNP
301: SLAAALGPSQ PSSNLNLAAV GLTPGSAGGL EGPDRIFVGG LPYYFTEAQV RELLESFGPL RGFDLVKDRE TGNSKGYAFC VYQDLNVTDI ACAALNGIKM
401: GDKTLTVRRA NQGSAQPRPE QENILLQAQQ QVQLQKLVYQ VGALPTKVVC LTQVVTADEL KDDEEYEDIM EDMRLEAGKY GNLVKVVIPR PHLSGEPVSG
501: VGKVFLEYAD VDGSTKAKTA MHGRKFGGNP VVAVFYPENK FAEEDYDAAA

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.