CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031341.1-P	Field mustard	nucleus	97.61	97.61
CDY12868	Canola	mitochondrion	51.0	56.14
PGSC0003DMT400040069	Potato	cytosol	52.99	42.77
CDY67096	Canola	mitochondrion	39.84	40.49
CDX75589	Canola	mitochondrion	49.0	34.65
CDY40493	Canola	nucleus	35.86	32.03
CDY12869	Canola	nucleus	62.95	31.85
CDY40481	Canola	nucleus	63.35	30.81
HORVU5Hr1G090000.2	Barley	nucleus	48.61	30.73
GSMUA_Achr4P16510_001	Banana	nucleus	54.18	28.81
CDY46188	Canola	nucleus	59.36	25.08
Solyc02g062920.2.1	Tomato	nucleus	55.78	25.0
PGSC0003DMT400033041	Potato	nucleus	54.98	24.82
EES08974	Sorghum	nucleus	53.78	24.77
Solyc02g085570.2.1	Tomato	nucleus	54.98	24.73
AT1G60900.1	Thale cress	nucleus	57.77	24.62
CDY03767	Canola	nucleus	59.36	24.55
CDY35472	Canola	nucleus	52.59	24.0
CDY40492	Canola	nucleus	14.34	24.0
TraesCS4D01G143400.3	Wheat	nucleus	52.19	23.86
HORVU4Hr1G029030.3	Barley	nucleus	52.19	23.82
CDY24773	Canola	nucleus	52.19	23.65
GSMUA_Achr4P11020_001	Banana	nucleus	53.78	23.44
TraesCS4B01G145600.4	Wheat	nucleus	52.99	23.37
Os11t0636900-02	Rice	nucleus	53.39	23.34
TraesCS4D01G150000.4	Wheat	nucleus	52.99	23.21
KRH64800	Soybean	nucleus	55.38	23.17
Solyc12g008750.1.1	Tomato	nucleus	55.38	22.9
TraesCSU01G068100.3	Wheat	nucleus	52.59	22.76
TraesCS4A01G165000.4	Wheat	nucleus	52.99	22.73
TraesCS4A01G171800.3	Wheat	nucleus	52.59	22.72
KRH56450	Soybean	nucleus	54.58	22.64
PGSC0003DMT400000919	Potato	nucleus	54.18	22.48
KXG28995	Sorghum	nucleus	52.99	22.17
CDY66742	Canola	nucleus	49.8	22.05
HORVU4Hr1G038850.14	Barley	nucleus	52.99	21.98
HORVU5Hr1G089980.2	Barley	nucleus, plastid	48.21	21.27
CDY30313	Canola	nucleus	49.8	21.26
KXG29128	Sorghum	nucleus	51.0	20.22
TraesCS5A01G366000.1	Wheat	nucleus	48.61	20.13
TraesCS5D01G375600.1	Wheat	nucleus	47.81	19.64
TraesCS5B01G368400.1	Wheat	nucleus	47.81	19.05
TraesCS5A01G040700.1	Wheat	cytosol	7.17	10.84
TraesCS2A01G122400.1	Wheat	nucleus	6.77	10.43
TraesCS2B01G144600.1	Wheat	nucleus	6.77	10.43
TraesCS5B01G041900.1	Wheat	nucleus	6.37	9.64
VIT_13s0139g00390.t01	Wine grape	plasma membrane	5.58	8.97
AT1G60830.2	Thale cress	nucleus	3.59	8.11
CDY55407	Canola	nucleus	3.59	8.04
VIT_13s0139g00410.t01	Wine grape	cytosol	1.99	7.35
TraesCS5D01G071600.1	Wheat	nucleus	5.18	6.95
TraesCS5D01G071700.1	Wheat	nucleus	4.38	6.4
TraesCS5B01G067400.1	Wheat	nucleus	3.98	5.35
Zm00001d007635_P004	Maize	nucleus	14.34	5.11
CDX84685	Canola	nucleus	6.37	4.3
CDX79530	Canola	nucleus	13.94	2.91
CDX84686	Canola	nucleus	7.17	2.01

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:A0A078J114	UniProt:A0A078J114	EnsemblPlants:CDY55589	ProteinID:CDY55589
ProteinID:CDY55589.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00017049001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDCC8D
SEG:seg	:	:	:	:	:

Description

BnaA01g36380DBnaA01g36380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J114]

Coordinates

chrLK033414:+:16152..18802

Molecular Weight (calculated)

27391.9 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.372

Length

251 amino acids

Sequence
(BLAST)

001: MGSKWRKAKI ALGVNLCLYV PKTLEEESRT SNNAVSLSPV TVPRPTTPVP SSSGLRLPWS FSKSSAKGVP VKVKRPTDYN PSLAAALGPS QPNPNLNLAA
101: VGISSGSTGG LEGPDRLFVG GLPYHLTEDQ IRELLESFGP LRDFNLIKDR DTGNSMGYAF CVFQDPSVTD IACAALNGIK MGNKTLTVRR AVQGAIQPKP
201: EQEDILLHAQ QQIALQWRQP CLTARYLRLN LNQTEPWRAR RTLSEEVSKG K

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.