Factsheet for TraesCS4B01G145600.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G128600.1
TraesCS1A01G176500.1
TraesCS1A01G314200.1
TraesCS1B01G146600.1
TraesCS1B01G203600.1
TraesCS1B01G326500.1
TraesCS1D01G124800.1
TraesCS1D01G162500.1
TraesCS1D01G314700.1
TraesCS2A01G255800.1
TraesCS2D01G266900.1
TraesCS3A01G328100.1
TraesCS3B01G357600.1
TraesCS3D01G321700.1
TraesCS4A01G355900.1
TraesCS5A01G022300.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1
TraesCS7A01G422700.1
TraesCS7B01G323100.1
TraesCS7D01G415100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	TraesCS1A01G314200.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1B01G326500.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS1D01G314700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3A01G328100.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3B01G357600.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS3D01G321700.1	AT1G28360.1	21798944
AT4G36690.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G36690.1	TraesCS1A01G128600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1A01G176500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G146600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1B01G203600.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G124800.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS1D01G162500.1	AT3G50670.1	21798944
AT4G36690.1	TraesCS5A01G022300.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7A01G422700.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7B01G323100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS7D01G415100.1	AT5G49400.1	21798944
AT4G36690.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT4G36690.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G150000.4	Wheat	nucleus	94.2	93.54
TraesCS4A01G165000.4	Wheat	nucleus	94.55	91.97
HORVU4Hr1G038850.14	Barley	nucleus	85.94	80.83
PGSC0003DMT400040069	Potato	cytosol	43.76	80.06
CDY67096	Canola	mitochondrion	34.09	78.54
CDY12868	Canola	mitochondrion	31.46	78.51
Bra040973.1-P	Field mustard	nucleus	35.15	73.53
CDX75589	Canola	mitochondrion	45.69	73.24
GSMUA_Achr4P16510_001	Banana	nucleus	59.93	72.25
AT1G60830.2	Thale cress	nucleus	13.88	71.17
Zm00001d048777_P007	Maize	nucleus	73.11	69.57
KXG28995	Sorghum	nucleus	73.29	69.5
CDY55407	Canola	nucleus	13.18	66.96
CDY40492	Canola	nucleus	17.57	66.67
GSMUA_Achr4P11020_001	Banana	nucleus	66.96	66.15
Zm00001d007632_P003	Maize	nucleus	72.76	65.82
VIT_04s0023g01450.t01	Wine grape	nucleus	63.44	63.89
Solyc02g062920.2.1	Tomato	nucleus	62.57	63.57
CDY40481	Canola	nucleus	57.47	63.37
PGSC0003DMT400033041	Potato	nucleus	61.86	63.31
CDY12869	Canola	nucleus	54.83	62.9
Solyc02g085570.2.1	Tomato	nucleus	61.51	62.72
AT1G60900.1	Thale cress	nucleus	64.15	61.97
VIT_13s0139g00410.t01	Wine grape	cytosol	7.38	61.76
Bra027119.1-P	Field mustard	nucleus	53.25	61.71
CDY35472	Canola	nucleus	58.88	60.91
KRH64800	Soybean	nucleus	63.97	60.67
CDY24773	Canola	nucleus	59.05	60.65
Bra010569.1-P	Field mustard	nucleus	59.05	60.65
AT4G36690.1	Thale cress	nucleus	60.63	60.21
Bra040940.1-P	Field mustard	nucleus	58.88	59.61
Bra031477.1-P	Field mustard	nucleus	62.21	59.6
CDY46188	Canola	nucleus	62.21	59.6
KRH56450	Soybean	nucleus	63.27	59.5
CDY66742	Canola	nucleus	58.52	58.73
CDY03767	Canola	nucleus	61.51	57.66
CDY30313	Canola	nucleus	59.58	57.65
Solyc12g008750.1.1	Tomato	nucleus	60.46	56.67
TraesCS5B01G368400.1	Wheat	nucleus	62.57	56.51
PGSC0003DMT400000919	Potato	nucleus	59.75	56.2
CDY40493	Canola	nucleus	27.07	54.8
CDY55589	Canola	mitochondrion	23.37	52.99
Bra010656.1-P	Field mustard	mitochondrion, plastid	23.55	52.96
Bra031341.1-P	Field mustard	nucleus	22.85	51.79
TraesCS5B01G041900.1	Wheat	nucleus	13.18	45.18
TraesCS2B01G144600.1	Wheat	nucleus	12.83	44.79
VIT_13s0139g00390.t01	Wine grape	plasma membrane	9.31	33.97
TraesCS5B01G067400.1	Wheat	nucleus	10.19	31.02

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGRFAMs:TIGR01642	EnsemblPlantsGene:TraesCS4B01G145600	EnsemblPlants:TraesCS4B01G145600.4	InterPro:U2AF_lg
TIGR:cd12230	TIGR:cd12231	TIGR:cd12232	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:207093155..207103818

Molecular Weight (calculated)

63131.8 Da

IEP (calculated)

8.545

GRAVY (calculated)

-0.924

Length

569 amino acids

Sequence
(BLAST)

001: MAEYEEGYEG NGDPAAAAAA VTGGSPPTKP SGFSDQPDGR SQQEVQPHEG RSSKSRERDR GREKDKDKER DREHGRDRER GRDKDRERDR GDRDRERDRH
101: HREHRERSEK REHCGHSDDH DRHRSRDRDI ERRDRDKDGH RRHRSRSRSK GRERRSRSRS RSRSKSKRVS GFDQGPSQAI PMVTPGATPG QLPAVAPLIT
201: GMLPNMFNFT APTQFNPLVM QPQAMTQQAT RHARRVYVGG LPPTANEQTV AIYFNQVMAA IGGNTAGPGD AVLNVYINHD KKFAFVEMRS VEEASNAMAL
301: DGIMFEGAPV KVRRPTDYNP SLAAALGPSQ PNPNLNLGAV GLTPGSAGGL EGPDRIFVGG LPYYFTEAQV RELLESFGPL RGFDLVKDRE TGNSKGYAFC
401: VYQDLNVTDI ACAALNGIKM GDKTLTVRRA NQGTSQPRPE QETILLHAQQ QVQMQKLVLQ VGGALPTKVV CLTQVVSADE LRDDEEYEDI FEDMREEGRK
501: YGNLVKAVIP RPDPSGAAVP GVGKVFLEYA DIDGSTKAKV GMHGRKFGGN QVVAVFYPEN KFADGDYDD

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.