Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G128600.1 | Wheat | nucleus | 97.7 | 97.3 |
| TraesCS1B01G146600.1 | Wheat | nucleus | 68.48 | 91.62 |
| HORVU1Hr1G030660.5 | Barley | nucleus | 94.57 | 90.96 |
| Os10t0115600-02 | Rice | nucleus | 78.91 | 81.64 |
| EER95096 | Sorghum | nucleus | 75.57 | 74.79 |
| EER91800 | Sorghum | nucleus | 71.19 | 70.16 |
| TraesCS1D01G162500.1 | Wheat | nucleus | 70.15 | 69.85 |
| VIT_04s0023g01580.t01 | Wine grape | nucleus | 49.06 | 66.01 |
| GSMUA_Achr10P... | Banana | nucleus | 52.61 | 64.62 |
| Zm00001d014343_P002 | Maize | nucleus | 75.16 | 64.06 |
| GSMUA_Achr7P08090_001 | Banana | nucleus | 53.44 | 61.84 |
| Bra012098.1-P | Field mustard | cytosol | 21.5 | 57.87 |
| CDY53849 | Canola | nucleus, plastid | 24.22 | 56.86 |
| CDX81371 | Canola | nucleus | 47.81 | 54.39 |
| AT3G50670.1 | Thale cress | nucleus | 48.23 | 54.1 |
| CDY57127 | Canola | plasma membrane | 47.6 | 54.03 |
| Solyc02g085420.2.1 | Tomato | nucleus | 53.44 | 53.56 |
| KRH28659 | Soybean | nucleus | 53.24 | 52.9 |
| PGSC0003DMT400038558 | Potato | nucleus | 52.4 | 52.84 |
| KRH76798 | Soybean | nucleus | 53.03 | 52.81 |
| GSMUA_Achr7P00820_001 | Banana | cytosol | 10.44 | 51.55 |
| KRH69931 | Soybean | cytosol, mitochondrion, nucleus | 14.82 | 36.41 |
| CDY30756 | Canola | nucleus, plastid | 31.52 | 36.39 |
| TraesCS5D01G304800.1 | Wheat | nucleus | 19.83 | 22.67 |
Protein Annotations
| MapMan:16.4.1.1.1 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0030619 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF12220 |
| PFscan:PS50102 | PANTHER:PTHR13952 | PANTHER:PTHR13952:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS1D01G124800 | EnsemblPlants:TraesCS1D01G124800.1 | InterPro:U1snRNP70_N | TIGR:cd12236 | SEG:seg |
| InterPro:snRNP70_RRM | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:131144486..131150060
Molecular Weight (calculated)
56264.6 Da
IEP (calculated)
9.645
GRAVY (calculated)
-1.763
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDYGSAMTR GNPDGGSQGR PKGVPRANVQ QLKLMGQGHP TGLTPNLLKL FEARPMLEHK PPVQKRKLPA YTGMAQFVSR FAEPGDPEYA PPVPTCETKA
101: EKKDRIRKLK LEQGADKVAK ELQNYDPQSD PNTTSDPYKT LFVARLNYET SESRVKREFE AYGPIKRVRL VTDKDTNKPR GYAFIEYMHT RDMKNAYKQA
201: DGRKVDNKRV LVDVERGRTV PNWRPRRLGG GLGSSRICGA SADQKPPARE PSSVGRPRSE EPKRGDSRVD RDREKSRERI RERDRDENPR ERSHDRIRER
301: DSREERHHHR DRDRTRDRDR GRDREKDHGR DRDRRDRDRD RDRGRDHDRE KDRGLSHDRH RERGRDRERD HERASYERDR AHLKDRDAEY NGEPKHDRSM
401: ADYGKHYGSN QYEQHKSYES YHYQVQGGHG HETESSKRHE HEYYQAQPNT EPEGPEEGEA YEEGDYQYHQ VAEEQKTEA
101: EKKDRIRKLK LEQGADKVAK ELQNYDPQSD PNTTSDPYKT LFVARLNYET SESRVKREFE AYGPIKRVRL VTDKDTNKPR GYAFIEYMHT RDMKNAYKQA
201: DGRKVDNKRV LVDVERGRTV PNWRPRRLGG GLGSSRICGA SADQKPPARE PSSVGRPRSE EPKRGDSRVD RDREKSRERI RERDRDENPR ERSHDRIRER
301: DSREERHHHR DRDRTRDRDR GRDREKDHGR DRDRRDRDRD RDRGRDHDRE KDRGLSHDRH RERGRDRERD HERASYERDR AHLKDRDAEY NGEPKHDRSM
401: ADYGKHYGSN QYEQHKSYES YHYQVQGGHG HETESSKRHE HEYYQAQPNT EPEGPEEGEA YEEGDYQYHQ VAEEQKTEA
001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR
Arabidopsis Description
RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.