Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G219000.2 | Wheat | nucleus | 83.64 | 91.09 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 83.27 | 89.96 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 50.93 | 75.27 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 50.19 | 75.0 |
| Os02t0610600-01 | Rice | nucleus | 53.53 | 72.0 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 50.93 | 70.62 |
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 45.72 | 67.96 |
| PGSC0003DMT400067677 | Potato | nucleus | 46.1 | 67.76 |
| Zm00001d017177_P007 | Maize | nucleus | 63.57 | 67.59 |
| PGSC0003DMT400075974 | Potato | nucleus | 45.35 | 66.67 |
| KRH16160 | Soybean | endoplasmic reticulum | 43.49 | 65.73 |
| KRH04931 | Soybean | nucleus | 42.75 | 64.61 |
| CDX72313 | Canola | nucleus | 46.47 | 63.45 |
| AT4G31580.1 | Thale cress | nucleus | 46.1 | 62.0 |
| CDY13444 | Canola | nucleus | 45.35 | 61.31 |
| AT2G24590.1 | Thale cress | nucleus | 44.61 | 61.22 |
| Bra023994.1-P | Field mustard | nucleus | 44.98 | 60.8 |
| CDY45585 | Canola | nucleus | 42.38 | 58.16 |
| CDY20328 | Canola | nucleus | 42.38 | 58.16 |
| Zm00001d051052_P001 | Maize | nucleus | 58.36 | 56.68 |
| OQU85289 | Sorghum | plastid | 65.43 | 55.52 |
| Bra032082.1-P | Field mustard | nucleus | 41.64 | 55.17 |
| Solyc08g069120.2.1 | Tomato | nucleus | 46.1 | 51.03 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 6.32 | 43.59 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009987 |
| InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF23 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | EnsemblPlantsGene:TraesCS6D01G202100 | EnsemblPlants:TraesCS6D01G202100.1 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | TIGR:cd12373 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6D:-:285020474..285023743
Molecular Weight (calculated)
30223.3 Da
IEP (calculated)
12.035
GRAVY (calculated)
-1.188
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSAFFEEF FRSSSCRSAA AVMARVYVGN LDPRATAREI EDEFRVFGVL KSVWVARKPP GFAFIDFDET RDAKDAIREL DGKNGWRVEL STKSGSGRGR
101: ERERSGGSDM KCYECGESGH FARECRLRIG SGGLGSGRRR SRSPRHRSRS RSPRYRRSPS YGRRSYSPRD RSPRKRSYSR SPPPPRARSI SRSPPPARAR
201: SISRSPPPAR GRSISRSPPP ARARNISRSP PPPRARSISK SPPPARERSY SRSPAQPPQR EESPYADNA
101: ERERSGGSDM KCYECGESGH FARECRLRIG SGGLGSGRRR SRSPRHRSRS RSPRYRRSPS YGRRSYSPRD RSPRKRSYSR SPPPPRARSI SRSPPPARAR
201: SISRSPPPAR GRSISRSPPP ARARNISRSP PPPRARSISK SPPPARERSY SRSPAQPPQR EESPYADNA
001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
Arabidopsis Description
RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.