Factsheet for Solyc08g069120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099810.2.1
Solyc02g085420.2.1
Solyc03g112050.2.1
Solyc03g123840.2.1
Solyc05g054920.2.1
Solyc07g063900.2.1
Solyc09g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Solyc01g099810.2.1	AT1G09140.1	21798944
AT2G24590.1	Solyc03g123840.2.1	AT3G21215.1	21798944
AT2G24590.1	Solyc07g063900.2.1	AT5G54580.1	21798944
AT4G31580.1	Solyc05g054920.2.1	AT2G37340.1	18674533
AT4G31580.1	Solyc09g005980.2.1	AT2G37340.1	18674533
AT4G31580.1	Solyc02g085420.2.1	AT3G50670.1	10593939
AT4G31580.1	Solyc02g085420.2.1	AT3G50670.1	9761791
AT4G31580.1	Solyc03g112050.2.1	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075974	Potato	nucleus	74.49	98.91
VIT_04s0069g00800.t01	Wine grape	nucleus	68.31	91.71
KRH04931	Soybean	nucleus	63.37	86.52
KRH16160	Soybean	endoplasmic reticulum	63.37	86.52
EES07659	Sorghum	nucleus	48.97	73.01
AT4G31580.1	Thale cress	nucleus	60.08	73.0
CDY20328	Canola	nucleus	58.85	72.96
CDY45585	Canola	nucleus	58.85	72.96
AT2G24590.1	Thale cress	nucleus	57.61	71.43
Bra032082.1-P	Field mustard	nucleus	59.26	70.94
CDX72313	Canola	nucleus	57.2	70.56
Bra023994.1-P	Field mustard	nucleus	57.61	70.35
CDY13444	Canola	nucleus	57.61	70.35
TraesCSU01G104300.1	Wheat	nucleus	51.44	68.68
TraesCS7A01G152800.1	Wheat	nucleus	51.44	68.68
Os06t0187900-02	Rice	nucleus	52.26	68.65
GSMUA_Achr4P09230_001	Banana	nucleus	50.62	68.33
TraesCS7B01G056600.2	Wheat	nucleus	51.44	68.31
GSMUA_Achr8P24800_001	Banana	nucleus	51.03	68.13
EER87987	Sorghum	nucleus	51.03	66.67
TraesCS6A01G349500.1	Wheat	nucleus	53.09	66.49
TraesCS6B01G382600.1	Wheat	nucleus	53.09	66.49
TraesCS6D01G332000.1	Wheat	nucleus	52.67	65.98
Os02t0789400-01	Rice	nucleus	48.97	64.32
Os02t0610600-01	Rice	nucleus	50.21	61.0
Zm00001d052062_P002	Maize	extracellular	41.15	56.18
HORVU6Hr1G083840.4	Barley	plastid	55.56	54.88
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	33.74	53.95
Zm00001d045330_P001	Maize	nucleus	33.33	53.29
TraesCS6B01G248500.1	Wheat	nucleus	51.03	49.8
TraesCS6A01G219000.2	Wheat	nucleus	50.62	49.8
Zm00001d045076_P001	Maize	nucleus	42.8	49.76
Zm00001d017177_P007	Maize	nucleus	49.79	47.83
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	44.03	46.12
TraesCS6D01G202100.1	Wheat	nucleus	51.03	46.1
HORVU7Hr1G031320.1	Barley	nucleus	52.67	44.44
Zm00001d051052_P001	Maize	nucleus	48.56	42.6
Zm00001d028789_P001	Maize	cytosol	37.86	41.44
OQU85289	Sorghum	plastid	53.09	40.69

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:K4CMD2
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147
PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	EnsemblPlantsGene:Solyc08g069120.2	EnsemblPlants:Solyc08g069120.2.1	UniParc:UPI000276AED5	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:58183922..58188496

Molecular Weight (calculated)

27496.4 Da

IEP (calculated)

11.799

GRAVY (calculated)

-0.964

Length

243 amino acids

Sequence
(BLAST)

001: MHVEPHRRAL SVERWVCLGR AIGRLGPHFL FQQNTKSSSF FFTALLFSAR VSGISRCVLK MSRVYVGNLD PRVSERELED EFRIFGVIRS VWVARRPPGY
101: AFIDFDDRRD AQDAIKELDG KNGWRVELSH NSRGGGGGGR GGGRGRSGGS DLKCYECGES GHFARECRTR GGPGAGRRRS RSPPRYRRSP SYGRRSYSPR
201: GRSPRRRSPS PRGRSYSRSP YRGREEAPYV NGNGLRECHR SRS

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.