Factsheet for Zm00001d017177_P007

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005361_P007
Zm00001d009821_P001
Zm00001d011004_P008
Zm00001d011005_P005
Zm00001d011258_P001
Zm00001d014343_P002
Zm00001d017096_P005
Zm00001d024675_P001
Zm00001d035551_P007
Zm00001d035552_P001
Zm00001d037543_P001
Zm00001d037925_P006
Zm00001d040672_P013
Zm00001d041673_P001
Zm00001d044338_P003
Zm00001d047498_P003
Zm00001d049346_P001
Zm00001d050970_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24590.1	Zm00001d009821_P001	AT1G09140.1	21798944
AT2G24590.1	Zm00001d037925_P006	AT1G09140.1	21798944
AT2G24590.1	Zm00001d040672_P013	AT1G09140.1	21798944
AT2G24590.1	Zm00001d041673_P001	AT1G09140.1	21798944
AT2G24590.1	Zm00001d047498_P003	AT1G09140.1	21798944
AT2G24590.1	Zm00001d049346_P001	AT3G21215.1	21798944
AT2G24590.1	Zm00001d011258_P001	AT4G32660.1	21798944
AT2G24590.1	Zm00001d044338_P003	AT4G32660.1	21798944
AT2G24590.1	Zm00001d024675_P001	AT5G54580.1	21798944
AT4G31580.1	Zm00001d011004_P008	AT2G37340.1	18674533
AT4G31580.1	Zm00001d011005_P005	AT2G37340.1	18674533
AT4G31580.1	Zm00001d035551_P007	AT2G37340.1	18674533
AT4G31580.1	Zm00001d035552_P001	AT2G37340.1	18674533
AT4G31580.1	Zm00001d037543_P001	AT2G37340.1	18674533
AT4G31580.1	Zm00001d014343_P002	AT3G50670.1	10593939
AT4G31580.1	Zm00001d014343_P002	AT3G50670.1	9761791
AT4G31580.1	Zm00001d005361_P007	AT4G24740.1	10593939
AT4G31580.1	Zm00001d017096_P005	AT4G24740.1	10593939
AT4G31580.1	Zm00001d050970_P003	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0610600-01	Rice	nucleus	58.89	74.5
GSMUA_Achr8P24800_001	Banana	nucleus	53.36	74.18
GSMUA_Achr4P09230_001	Banana	nucleus	52.17	73.33
OQU85289	Sorghum	plastid	91.7	73.19
TraesCS6B01G248500.1	Wheat	nucleus	71.15	72.29
TraesCS6A01G219000.2	Wheat	nucleus	67.98	69.64
VIT_04s0069g00800.t01	Wine grape	nucleus	47.83	66.85
KRH04931	Soybean	nucleus	46.64	66.29
KRH16160	Soybean	endoplasmic reticulum	46.64	66.29
PGSC0003DMT400075974	Potato	nucleus	47.43	65.57
PGSC0003DMT400067677	Potato	nucleus	46.64	64.48
TraesCS6D01G202100.1	Wheat	nucleus	67.59	63.57
Zm00001d051052_P001	Maize	nucleus	69.17	63.18
Zm00001d052062_P002	Maize	extracellular	43.87	62.36
CDX72313	Canola	nucleus	47.43	60.91
Zm00001d045330_P001	Maize	nucleus	36.36	60.53
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	35.97	59.87
CDY13444	Canola	nucleus	46.25	58.79
Bra023994.1-P	Field mustard	nucleus	46.25	58.79
AT4G31580.1	Thale cress	nucleus	45.45	57.5
Zm00001d045076_P001	Maize	nucleus	47.43	57.42
AT2G24590.1	Thale cress	nucleus	44.27	57.14
CDY45585	Canola	nucleus	43.48	56.12
CDY20328	Canola	nucleus	43.48	56.12
Bra032082.1-P	Field mustard	nucleus	43.87	54.68
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	47.04	51.29
Solyc08g069120.2.1	Tomato	nucleus	47.83	49.79
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	7.51	48.72
Zm00001d028789_P001	Maize	cytosol	39.53	45.05

Protein Annotations

EntrezGene:100272442	MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	ProteinID:AQK72518.1	ProteinID:AQK72520.1
ProteinID:AQK72523.1	UniProt:B4F7Z5	EMBL:BT033233	EMBL:BT039784	EMBL:BT054902	EMBL:BT060963
EMBL:BT066480	EMBL:BT086300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EMBL:KC417028	EMBL:KC417029
EMBL:KC417030	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR23147	PANTHER:PTHR23147:SF23	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00017B5FDC	EnsemblPlantsGene:Zm00001d017177	EnsemblPlants:Zm00001d017177_P007	EnsemblPlants:Zm00001d017177_T007
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

Serine/arginine-rich splicing factor RSZ22

Coordinates

chr5:-:188085593..188091191

Molecular Weight (calculated)

28285.9 Da

IEP (calculated)

12.015

GRAVY (calculated)

-1.299

Length

253 amino acids

Sequence
(BLAST)

001: MARVYVGNLD PRVTAREIED EFRMFGVLRS VWVARKPPGF AFIDFDDRRD AQDAIRELDG KNGWRVELST KVGGGRGRDR NGSDMKCYEC GEAGHFAREC
101: RLRIGSGGLG SGRRRSRSPR YRSRSRSRSP RYRRSPSYSR SPRDRSPRRR SYSRSPLGSP ARSLSRSPPL PPPPPRNNSR SPPGAREVSR SPPPPPPRNN
201: SRSPPAARDV SRSPPAARDV SRSPPPPPDA RRSYSGSPGQ QPQRDESPYA NDA

Best Arabidopsis Sequence Match ( AT2G24590.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS

Arabidopsis Description

RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.