CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79732
CDX81371
CDY03422
CDY03423
CDY30756
CDY34307
CDY46773
CDY47646
CDY53849
CDY57127
CDY59084

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31580.1	CDY47646	AT1G23860.1	18674533
AT4G31580.1	CDY59084	AT1G23860.1	18674533
AT4G31580.1	CDX79732	AT2G37340.1	18674533
AT4G31580.1	CDY46773	AT2G37340.1	18674533
AT4G31580.1	CDX81371	AT3G50670.1	10593939
AT4G31580.1	CDY30756	AT3G50670.1	10593939
AT4G31580.1	CDY53849	AT3G50670.1	10593939
AT4G31580.1	CDY57127	AT3G50670.1	10593939
AT4G31580.1	CDX81371	AT3G50670.1	9761791
AT4G31580.1	CDY30756	AT3G50670.1	9761791
AT4G31580.1	CDY53849	AT3G50670.1	9761791
AT4G31580.1	CDY57127	AT3G50670.1	9761791
AT4G31580.1	CDY03422	AT4G24740.1	10593939
AT4G31580.1	CDY03423	AT4G24740.1	10593939
AT4G31580.1	CDY34307	AT4G24740.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13444	Canola	nucleus	92.89	91.96
AT4G31580.1	Thale cress	nucleus	83.76	82.5
KRH16160	Soybean	endoplasmic reticulum	72.08	79.78
KRH04931	Soybean	nucleus	71.57	79.21
PGSC0003DMT400067677	Potato	nucleus	72.08	77.6
CDY20328	Canola	nucleus	77.16	77.55
CDY45585	Canola	nucleus	77.16	77.55
PGSC0003DMT400075974	Potato	nucleus	71.07	76.5
CDY59084	Canola	nucleus	50.25	76.15
EES07659	Sorghum	nucleus	60.91	73.62
Os06t0187900-02	Rice	nucleus	64.97	69.19
GSMUA_Achr4P09230_001	Banana	nucleus	62.94	68.89
EER87987	Sorghum	nucleus	64.97	68.82
GSMUA_Achr8P24800_001	Banana	nucleus	62.94	68.13
TraesCS6B01G382600.1	Wheat	nucleus	66.5	67.53
TraesCS6D01G332000.1	Wheat	nucleus	66.5	67.53
TraesCS6A01G349500.1	Wheat	nucleus	66.5	67.53
CDY47646	Canola	nucleus	62.94	67.03
TraesCS7A01G152800.1	Wheat	nucleus	61.42	66.48
TraesCSU01G104300.1	Wheat	nucleus	61.42	66.48
TraesCS7B01G056600.2	Wheat	nucleus	60.91	65.57
Os02t0789400-01	Rice	nucleus	60.41	64.32
Os02t0610600-01	Rice	nucleus	60.91	60.0
Solyc08g069120.2.1	Tomato	nucleus	70.56	57.2
Zm00001d052062_P002	Maize	extracellular	50.25	55.62
Zm00001d004066_P001	Maize	cytosol, golgi, nucleus	41.62	53.95
Zm00001d045330_P001	Maize	nucleus	41.12	53.29
HORVU6Hr1G083840.4	Barley	plastid	66.5	53.25
TraesCS6A01G219000.2	Wheat	nucleus	63.96	51.01
TraesCS6B01G248500.1	Wheat	nucleus	64.47	51.0
Zm00001d045076_P001	Maize	nucleus	52.79	49.76
Zm00001d017177_P007	Maize	nucleus	60.91	47.43
TraesCS6D01G202100.1	Wheat	nucleus	63.45	46.47
Zm00001d051052_P001	Maize	nucleus	63.96	45.49
Zm00001d018341_P007	Maize	cytosol, nucleus, plasma membrane	53.3	45.26
VIT_10s0042g00400.t01	Wine grape	endoplasmic reticulum, extracellular	8.63	43.59
HORVU7Hr1G031320.1	Barley	nucleus	60.91	41.67
Zm00001d028789_P001	Maize	cytosol	45.18	40.09
OQU85289	Sorghum	plastid	62.44	38.8

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078CBC2	EnsemblPlants:CDX72313	ProteinID:CDX72313
ProteinID:CDX72313.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00099802001
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0004EEDFF6	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

BnaC07g43350D

Coordinates

chrLK031796:+:653772..655006

Molecular Weight (calculated)

22765.5 Da

IEP (calculated)

11.855

GRAVY (calculated)

-1.577

Length

197 amino acids

Sequence
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRVYGVIKR QEFVWVARRP PGYAFLDFED PRDARDAIRG LDGKNGWRVE QSHNRGDRGG GRGGDRGGDR GGSDLKCYEC
101: GEPGHFAREC RNRGGTGRRR SRSRSRSPRY RRSPSYGRRS YSPRARSPPP PRRRSPSPPP ARGRSYSRSP PPYRRREELP YTNGNGLKDR RRSRSRS

Best Arabidopsis Sequence Match ( AT4G31580.1 )
(BLAST)

001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS

Arabidopsis Description

RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.