Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P24800_001 | Banana | nucleus | 93.89 | 92.86 |
| EES07659 | Sorghum | nucleus | 76.67 | 84.66 |
| Os06t0187900-02 | Rice | nucleus | 82.78 | 80.54 |
| TraesCSU01G104300.1 | Wheat | nucleus | 80.56 | 79.67 |
| TraesCS7A01G152800.1 | Wheat | nucleus | 80.56 | 79.67 |
| EER87987 | Sorghum | nucleus | 82.22 | 79.57 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 80.0 | 78.69 |
| Os02t0789400-01 | Rice | nucleus | 80.0 | 77.84 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 77.78 | 72.16 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 77.78 | 72.16 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 77.22 | 71.65 |
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 70.56 | 70.17 |
| PGSC0003DMT400067677 | Potato | nucleus | 70.0 | 68.85 |
| KRH16160 | Soybean | endoplasmic reticulum | 66.67 | 67.42 |
| Os02t0610600-01 | Rice | nucleus | 74.44 | 67.0 |
| KRH04931 | Soybean | nucleus | 66.11 | 66.85 |
| PGSC0003DMT400075974 | Potato | nucleus | 67.78 | 66.67 |
| Zm00001d052062_P002 | Maize | extracellular | 63.33 | 64.04 |
| CDX72313 | Canola | nucleus | 68.89 | 62.94 |
| Bra023994.1-P | Field mustard | nucleus | 69.44 | 62.81 |
| CDY13444 | Canola | nucleus | 69.44 | 62.81 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 52.78 | 62.5 |
| Zm00001d045330_P001 | Maize | nucleus | 52.22 | 61.84 |
| AT4G31580.1 | Thale cress | nucleus | 68.33 | 61.5 |
| AT2G24590.1 | Thale cress | nucleus | 66.67 | 61.22 |
| CDY20328 | Canola | nucleus | 63.33 | 58.16 |
| CDY45585 | Canola | nucleus | 63.33 | 58.16 |
| Zm00001d045076_P001 | Maize | nucleus | 67.22 | 57.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 69.44 | 57.87 |
| HORVU6Hr1G083840.4 | Barley | plastid | 77.78 | 56.91 |
| Bra032082.1-P | Field mustard | nucleus | 63.89 | 56.65 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 77.78 | 56.22 |
| GSMUA_Achr1P09660_001 | Banana | nucleus | 68.89 | 55.86 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 76.11 | 55.47 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 68.33 | 53.02 |
| Zm00001d017177_P007 | Maize | nucleus | 73.33 | 52.17 |
| VIT_10s0042g00400.t01 | Wine grape | endoplasmic reticulum, extracellular | 11.11 | 51.28 |
| Solyc08g069120.2.1 | Tomato | nucleus | 68.33 | 50.62 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 75.0 | 50.19 |
| HORVU7Hr1G031320.1 | Barley | nucleus | 80.0 | 50.0 |
| Zm00001d051052_P001 | Maize | nucleus | 73.89 | 48.01 |
| Zm00001d028789_P001 | Maize | cytosol | 57.22 | 46.4 |
| OQU85289 | Sorghum | plastid | 75.0 | 42.59 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:GSMUA_Achr4G09230_001 | EnsemblPlants:GSMUA_Achr4P09230_001 | EnsemblPlants:GSMUA_Achr4T09230_001 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | UniProt:M0SME0 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000295E197 | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
RNA recognition motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G09230_001]
Coordinates
chr4:+:6720325..6726672
Molecular Weight (calculated)
20783.1 Da
IEP (calculated)
11.993
GRAVY (calculated)
-1.420
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MARLYVGNLD PRTTARELED EFRVFGVLRS VWVARKPPGF AFIDFDDRRD AQDAIRDLDG KHGWRVELSH NSSSSRGRDR HGGSDMKCYE CGEPGHFARE
101: CRLRIGPGGL GSGRRRSRSR SRSPRYRRSP SYGRRSHSPR GRSPRQRSPS PRRRSYSRSP SNDNRHSESP HTNGYRRSRS
101: CRLRIGPGGL GSGRRRSRSR SRSPRYRRSP SYGRRSHSPR GRSPRQRSPS PRRRSYSRSP SNDNRHSESP HTNGYRRSRS
001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
Arabidopsis Description
RSZ22Serine/arginine-rich splicing factor RSZ22 [Source:UniProtKB/Swiss-Prot;Acc:O81126]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.