Factsheet for GSMUA_Achr3P17160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P09230_001
GSMUA_Achr8P24800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	GSMUA_Achr4P09230_001	AT4G31580.1	10593939
AT4G24740.1	GSMUA_Achr8P24800_001	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28600_001	Banana	cytosol	41.87	87.04
GSMUA_Achr11P...	Banana	cytosol	58.8	77.88
VIT_17s0000g09500.t01	Wine grape	nucleus	73.27	75.63
PGSC0003DMT400046853	Potato	cytosol	71.05	73.84
KRH57157	Soybean	cytosol	70.38	73.49
KRH63654	Soybean	nucleus	69.27	73.18
KRH54290	Soybean	cytosol, nucleus	69.04	72.94
Os12t0460800-03	Rice	cytosol	30.51	72.87
TraesCS6D01G193300.1	Wheat	cytosol	68.82	71.86
TraesCS6B01G238900.1	Wheat	cytosol	68.6	71.63
TraesCS6A01G210100.1	Wheat	cytosol	68.37	71.4
AT4G24740.1	Thale cress	nucleus	67.71	71.19
Solyc03g112050.2.1	Tomato	cytosol	61.25	70.88
PGSC0003DMT400030615	Potato	nucleus	66.82	69.93
Solyc05g013770.2.1	Tomato	nucleus	67.04	69.84
KXG30551	Sorghum	cytosol	69.27	69.73
VIT_01s0137g00580.t01	Wine grape	nucleus	66.82	69.44
Zm00001d017096_P005	Maize	cytosol	67.93	68.54
Zm00001d050970_P003	Maize	cytosol	67.71	68.16
KRH03872	Soybean	nucleus	70.82	67.37
HORVU6Hr1G053760.52	Barley	cytosol	65.26	67.2
GSMUA_Achr5P29170_001	Banana	nucleus	64.81	66.74
GSMUA_Achr9P03190_001	Banana	nucleus	64.59	66.51
KXG37288	Sorghum	cytosol	53.45	62.66
GSMUA_Achr8P04030_001	Banana	mitochondrion	55.01	53.7
CDY34307	Canola	plastid	67.71	41.82
CDY03422	Canola	plastid	67.48	41.68
Bra013829.1-P	Field mustard	nucleus	65.03	40.78
GSMUA_Achr11P...	Banana	cytosol	19.82	30.8
GSMUA_Achr4P11760_001	Banana	cytosol	23.16	28.11
GSMUA_Achr5P11070_001	Banana	cytosol	23.16	25.37
GSMUA_Achr1P02800_001	Banana	cytosol	22.72	24.64
GSMUA_Achr2P11360_001	Banana	cytosol	23.83	24.21
GSMUA_Achr8P26710_001	Banana	cytosol	23.39	23.7
GSMUA_Achr8P04590_001	Banana	nucleus	24.5	23.01
GSMUA_Achr4P18950_001	Banana	nucleus	24.5	15.67
GSMUA_AchrUn_...	Banana	nucleus	23.83	15.03
GSMUA_Achr10P...	Banana	nucleus	20.04	13.98
GSMUA_Achr8P14500_001	Banana	nucleus	24.5	11.41
GSMUA_Achr3P02060_001	Banana	nucleus	25.17	11.37
GSMUA_Achr1P22430_001	Banana	mitochondrion	24.28	10.6
GSMUA_Achr2P21700_001	Banana	nucleus	25.84	10.44
GSMUA_Achr1P12470_001	Banana	nucleus	24.94	10.33
GSMUA_Achr11P...	Banana	nucleus	25.17	10.3
GSMUA_Achr7P11320_001	Banana	nucleus	25.61	8.94
GSMUA_Achr11P...	Banana	nucleus	5.12	3.69
CDY03423	Canola	cytosol, peroxisome, plastid	1.34	1.92
Bra013830.1-P	Field mustard	plastid	0.45	0.68

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G17160_001
EnsemblPlants:GSMUA_Achr3P17160_001	EnsemblPlants:GSMUA_Achr3T17160_001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0SFD2	PFAM:PF00069
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF52	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00029664B6	:	:	:

Description

Serine/threonine-protein kinase AFC2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17160_001]

Coordinates

chr3:+:18430337..18434503

Molecular Weight (calculated)

51811.7 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.406

Length

449 amino acids

Sequence
(BLAST)

001: MDIKCLKEFP HHLVESRPRK RARLGWDVDP LAAAKAHIGM LCGQEVNVKC TVSSEATLDH TCSLKYAKDL HQHASPPWRE DDKDGHYKFE VGEDLTSRYK
101: IHGKMGEGTF GQVLECWDRE REEMVAIKII RGIKKYREAA MIEIDMLQQL GKHDKNGSLC VQIRNWFDYR NHICIVFEKL GPSLYDFLRK NNYRSFPIDL
201: VRKFARQLLE CVAFMHDMSL IHTDLKPENI LLVSPEYIRV PDYKVSIRSS KKGSFFKRVP KSSAIKVIDF GSTTYDHEDN NYVVSTRHYR APEVILGLGW
301: SYPCDIWSVG CILVELCSGQ TLFQTHDDLE HLAMMESALG PLPSNMLRLA YSATVIGTLR CTARRQKYIR RGRLNWPEGA TSRESMKAVL KLPRLQNLVM
401: QHTDNSAGDF INLLQGLLRY HPADRLSANE ALLHPFFTRI DKQRSWPCR

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.