Factsheet for Bra013830.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023994.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	Bra023994.1-P	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34307	Canola	plastid	99.66	40.03
CDY03422	Canola	plastid	98.97	39.75
Bra011368.1-P	Field mustard	nucleus	1.03	0.75
Solyc03g112050.2.1	Tomato	cytosol	0.68	0.52
Zm00001d005361_P007	Maize	cytosol, plastid	0.68	0.47
KXG35096	Sorghum	cytosol	0.68	0.47
TraesCS5A01G369500.2	Wheat	cytosol	0.68	0.47
HORVU5Hr1G091970.12	Barley	cytosol, mitochondrion	0.68	0.47
TraesCS5B01G371800.1	Wheat	cytosol	0.68	0.47
TraesCS5D01G378900.2	Wheat	cytosol, mitochondrion	0.68	0.47
KRH63654	Soybean	nucleus	0.68	0.47
KRH54290	Soybean	cytosol, nucleus	0.68	0.47
AT4G24740.1	Thale cress	nucleus	0.68	0.47
TraesCS6A01G210100.1	Wheat	cytosol	0.68	0.47
TraesCS6B01G238900.1	Wheat	cytosol	0.68	0.47
TraesCS6D01G193300.1	Wheat	cytosol	0.68	0.47
KRH57157	Soybean	cytosol	0.68	0.47
PGSC0003DMT400046853	Potato	cytosol	0.68	0.46
VIT_17s0000g09500.t01	Wine grape	nucleus	0.68	0.46
HORVU6Hr1G053760.52	Barley	cytosol	0.68	0.46
Bra007012.1-P	Field mustard	cytosol	0.68	0.45
Zm00001d017096_P005	Maize	cytosol	0.68	0.45
KXG30551	Sorghum	cytosol	0.68	0.45
Zm00001d050970_P003	Maize	cytosol	0.68	0.45
Bra003146.1-P	Field mustard	nucleus	0.68	0.45
GSMUA_Achr3P17160_001	Banana	cytosol	0.68	0.45
KRH03872	Soybean	nucleus	0.68	0.42
Bra013829.1-P	Field mustard	nucleus	0.68	0.28
KXG37288	Sorghum	cytosol	0.34	0.26
Bra017716.1-P	Field mustard	nucleus	0.34	0.23
Bra002070.1-P	Field mustard	cytosol	0.34	0.23
Bra011619.1-P	Field mustard	nucleus	0.34	0.23
Bra020218.1-P	Field mustard	nucleus	0.34	0.19
Bra002433.1-P	Field mustard	nucleus	0.34	0.19
Bra003844.1-P	Field mustard	nucleus	0.68	0.17
Bra006970.1-P	Field mustard	nucleus	0.34	0.16
Bra017346.1-P	Field mustard	nucleus	0.34	0.11
Bra025165.1-P	Field mustard	nucleus	0.34	0.11
Bra039487.1-P	Field mustard	nucleus	0.0	0.0
Bra035364.1-P	Field mustard	nucleus	0.0	0.0
Bra028159.1-P	Field mustard	cytosol	0.0	0.0
Os12t0460800-03	Rice	cytosol	0.0	0.0
Bra022240.1-P	Field mustard	nucleus	0.0	0.0
CDY03423	Canola	cytosol, peroxisome, plastid	0.0	0.0
Bra017026.1-P	Field mustard	cytosol	0.0	0.0
Bra015990.1-P	Field mustard	nucleus	0.0	0.0
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0
Bra004984.1-P	Field mustard	cytosol	0.0	0.0
Bra003145.1-P	Field mustard	plastid	0.0	0.0
GSMUA_Achr8P28600_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra013830.1	EnsemblPlants:Bra013830.1-P	EnsemblPlantsGene:Bra013830	Gene3D:3.40.250.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR001763	InterPro:IPR036873
InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR45187	PFAM:PF00581	PFscan:PS50206	SEG:seg
SMART:SM00450	SUPFAM:SSF52821	UniParc:UPI0002546651	UniProt:M4DBH0	MapMan:35.1	:

Description

AT4G24750 (E=3e-136) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G08920.1); Has 222 Blast hits to 222 proteins in 59 species: Archae - 8; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

Coordinates

chrA01:-:7983517..7985859

Molecular Weight (calculated)

32214.6 Da

IEP (calculated)

9.346

GRAVY (calculated)

-0.193

Length

292 amino acids

Sequence
(BLAST)

001: MESLSFPILN PLLASGSSLY RKQSSRVTSS MSSSVSFATG RTSLSTVRRS RVGVVKMQAV DEDIDLKQMR DMAAAKKRWD GLLREGKVKL LTPREAGYAI
101: QLSNKPLLDV RPSSERNKAW VKGSDWVPIF DNEDNLDAGT LSKKVTSFAM GGWWSGTPIL SFNKLFLSKV EEKFPKETEL IVACQKGLRS LAACELLINA
201: GYQNIFWVQG GLESAEDEDL VTEGSQPLKL AGIGGFSEFL GWTDQQRAQA AKEGWGYRLV FTARLFGVIL AADALFLGAQ QLGHYIQELR GH

Best Arabidopsis Sequence Match ( AT4G24750.1 )
(BLAST)

001: MESLSLPVLN PLLASGSNLF RNQHSRMTSS MVSSLKSPIG GTSLSTVRRF GVGVVRMQAV DEDIDLKQMR DIAAAKKRWD GLLREGKVKL LTPREAGYAI
101: SLSNKPLLDV RPSSERNKAW IKGSTWVPIF DNDDNLDAGT LSKKVTSFAM GGWWSGAPTL SFNRLFLSKV EEKFPKDSEL IVACQKGLRS LAACELLYNA
201: GYENLFWVQG GLESAQDEDL VTEGVQPLKL AGIGGFSEFL GWTDQQRAQA AKEGWGYRLV YTARLFGVVL AADALFVGAQ QLGHYIQELR GH

Arabidopsis Description

STR11Rhodanese-like domain-containing protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WWT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.