CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87987
EES07659
OQU85289

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	EER87987	AT4G31580.1	10593939
AT4G24740.1	EES07659	AT4G31580.1	10593939
AT4G24740.1	OQU85289	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30551	Sorghum	cytosol	74.15	63.68
TraesCS6B01G238900.1	Wheat	cytosol	71.02	63.26
TraesCS6A01G210100.1	Wheat	cytosol	71.02	63.26
TraesCS6D01G193300.1	Wheat	cytosol	70.76	63.02
GSMUA_Achr8P28600_001	Banana	cytosol	35.51	62.96
Os12t0460800-03	Rice	cytosol	30.29	61.7
HORVU6Hr1G053760.52	Barley	cytosol	67.1	58.95
VIT_17s0000g09500.t01	Wine grape	nucleus	64.75	57.01
KRH57157	Soybean	cytosol	63.45	56.51
KRH63654	Soybean	nucleus	62.14	56.0
PGSC0003DMT400046853	Potato	cytosol	62.92	55.79
KRH54290	Soybean	cytosol, nucleus	61.62	55.53
VIT_01s0137g00580.t01	Wine grape	nucleus	61.1	54.17
Solyc03g112050.2.1	Tomato	cytosol	54.57	53.87
GSMUA_Achr3P17160_001	Banana	cytosol	62.66	53.45
PGSC0003DMT400030615	Potato	nucleus	59.79	53.38
Solyc05g013770.2.1	Tomato	nucleus	60.05	53.36
AT4G24740.1	Thale cress	nucleus	59.27	53.16
KXG33666	Sorghum	cytosol	58.75	51.84
KRH03872	Soybean	nucleus	63.45	51.48
KXG35096	Sorghum	cytosol	56.66	51.18
EES00987	Sorghum	mitochondrion	50.13	49.74
CDY34307	Canola	plastid	59.53	31.36
CDY03422	Canola	plastid	59.27	31.22
Bra013829.1-P	Field mustard	nucleus	56.4	30.17
EER99321	Sorghum	cytosol	24.54	22.17
EER93458	Sorghum	nucleus	25.07	16.93
OQU78157	Sorghum	nucleus, plastid	23.76	14.04
OQU80322	Sorghum	nucleus	21.93	13.68
EES01706	Sorghum	nucleus	24.28	12.9
EER99364	Sorghum	cytosol	24.28	12.62
KXG24155	Sorghum	nucleus	26.89	10.77
KXG27048	Sorghum	nucleus	24.28	10.14
EES05664	Sorghum	nucleus	24.02	9.79
KXG37702	Sorghum	nucleus	26.63	9.26
CDY03423	Canola	cytosol, peroxisome, plastid	1.57	1.92
Bra013830.1-P	Field mustard	plastid	0.26	0.34

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.2	Gene3D:3.30.200.20	UniProt:A0A1B6QH88	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	EnsemblPlants:KXG37288	ProteinID:KXG37288	ProteinID:KXG37288.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF99	InterPro:Prot_kinase_dom	SMART:SM00220
EnsemblPlantsGene:SORBI_3001G043300	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00081AC813	:	:

Description

hypothetical protein

Coordinates

chr1:+:3245583..3248730

Molecular Weight (calculated)

43496.7 Da

IEP (calculated)

7.559

GRAVY (calculated)

-0.185

Length

383 amino acids

Sequence
(BLAST)

001: MPRALLDCGP CKRPRLGWDV GPAEMHQVQI GLCGQEVVNA ISAVELGFSS EAIVSSPVNQ EQPRDESTPL REDDKYGRYV FAVGDNLTSR CTFGQVLECW
101: DRERKEMVAI KITRGTKTYR DAAMIEIGIL EQLGKYDKSR SRLLVYISCS ILLLCSNTEL QVFEKLGPSL CDFLQKNIYR SFPVALVREV AKQLLECLAF
201: MHELRLMHTD LKPENILLVS PECIKVPDYK ASSRSPMEGS YYKWLPKSNA IKVIDFGSTI YGRLDQSYLV SIRHYRAPEV ILGHGWSYPC DIWSVGCILI
301: ELCTSHSAKY IREGRLNWPG GCTSWERMKA VTKLPRLQSL VMRNVDQSAG DIIDLLQGLL KYDPANRLTA QEALRHPFFT EEF

Best Arabidopsis Sequence Match ( AT3G53570.1 )
(BLAST)

001: MQSSVYRDKA SSIAMILETQ RNVEFPHRIV DKRPRKRPRL TWDAAPPLLP PPPPPTVFQP PLYYGPEFAS GLVPNFVYPN MFYNGLPRQG SPPWRPDDKD
101: GHYVFVVGDT LTPRYQILSK MGEGTFGQVL ECFDNKNKEV VAIKVIRSIN KYREAAMIEI DVLQRLTRHD VGGSRCVQIR NWFDYRNHIC IVFEKLGPSL
201: YDFLRKNSYR SFPIDLVREL GRQLLESVAY MHDLRLIHTD LKPENILLVS SEYIKIPDYK FLSRPTKDGS YFKNLPKSSA IKLIDFGSTT FEHQDHNYIV
301: STRHYRAPEV ILGVGWNYPC DLWSIGCILV ELCSGEALFQ THENLEHLAM MERVLGPLPP HMVLRADRRS EKYFRRGAKL DWPEGATSRD SLKAVWKLPR
401: LPNLIMQHVD HSAGDLIDLL QGLLRYDPTE RFKAREALNH PFFTRSREQS IPPFNPNPHP FLYNQKN

Arabidopsis Description

AFC1AT3G53570 protein [Source:UniProtKB/TrEMBL;Acc:B9DH08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.