Factsheet for PGSC0003DMT400046853

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400067677
PGSC0003DMT400075974

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	PGSC0003DMT400067677	AT4G31580.1	10593939
AT4G24740.1	PGSC0003DMT400075974	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112050.2.1	Tomato	cytosol	88.43	98.45
VIT_17s0000g09500.t01	Wine grape	nucleus	87.04	86.44
KRH57157	Soybean	cytosol	82.64	83.02
GSMUA_Achr11P...	Banana	cytosol	65.05	82.89
GSMUA_Achr8P28600_001	Banana	cytosol	41.44	82.87
KRH63654	Soybean	nucleus	81.25	82.59
KRH54290	Soybean	cytosol, nucleus	80.56	81.88
AT4G24740.1	Thale cress	nucleus	80.32	81.26
Os12t0460800-03	Rice	cytosol	34.95	80.32
KRH03872	Soybean	nucleus	83.56	76.48
PGSC0003DMT400030615	Potato	nucleus	74.07	74.59
TraesCS6B01G238900.1	Wheat	cytosol	72.92	73.26
TraesCS6A01G210100.1	Wheat	cytosol	72.69	73.02
TraesCS6D01G193300.1	Wheat	cytosol	72.69	73.02
KXG30551	Sorghum	cytosol	74.07	71.75
PGSC0003DMT400061423	Potato	nucleus	71.3	71.46
TraesCS5B01G371800.1	Wheat	cytosol	69.91	71.23
TraesCS5D01G378900.2	Wheat	cytosol, mitochondrion	69.91	71.23
TraesCS5A01G369500.2	Wheat	cytosol	69.91	71.23
Zm00001d050970_P003	Maize	cytosol	73.38	71.08
GSMUA_Achr3P17160_001	Banana	cytosol	73.84	71.05
HORVU5Hr1G091970.12	Barley	cytosol, mitochondrion	69.68	70.99
Zm00001d017096_P005	Maize	cytosol	72.92	70.79
KXG35096	Sorghum	cytosol	68.75	70.05
HORVU6Hr1G053760.52	Barley	cytosol	69.21	68.58
Zm00001d005361_P007	Maize	cytosol, plastid	66.9	68.48
KXG37288	Sorghum	cytosol	55.79	62.92
CDY34307	Canola	plastid	79.86	47.46
CDY03422	Canola	plastid	79.63	47.32
Bra013829.1-P	Field mustard	nucleus	76.39	46.09
PGSC0003DMT400079686	Potato	cytosol	22.69	34.03
PGSC0003DMT400069308	Potato	golgi, vacuole	25.46	30.22
PGSC0003DMT400003820	Potato	cytosol	24.31	23.54
PGSC0003DMT400045066	Potato	cytosol	24.31	23.44
PGSC0003DMT400006951	Potato	mitochondrion, nucleus	26.62	21.02
PGSC0003DMT400021639	Potato	nucleus	25.46	20.95
PGSC0003DMT400018439	Potato	nucleus	25.23	19.96
PGSC0003DMT400043636	Potato	cytosol	25.23	16.67
PGSC0003DMT400053226	Potato	mitochondrion	25.93	13.4
PGSC0003DMT400033770	Potato	mitochondrion	25.93	10.8
CDY03423	Canola	cytosol, peroxisome, plastid	1.85	2.56
PGSC0003DMT400069307	Potato	nucleus	2.55	1.26
PGSC0003DMT400079685	Potato	nucleus	2.31	1.15
Bra013830.1-P	Field mustard	plastid	0.46	0.68
PGSC0003DMT400068117	Potato	nucleus	0.23	0.24

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102588766	MapMan:18.4.3.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006397	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0046777	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
UniProt:M1BJS1	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400018195	PGSC:PGSC0003DMG400018195	EnsemblPlants:PGSC0003DMT400046853	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF52	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002969AC1	RefSeq:XP_006344489.1	:	:	:

Description

Afc [Source:PGSC_GENE;Acc:PGSC0003DMG400018195]

Coordinates

chr3:+:51833988..51837884

Molecular Weight (calculated)

50048.3 Da

IEP (calculated)

9.217

GRAVY (calculated)

-0.516

Length

432 amino acids

Sequence
(BLAST)

001: METERVTGFP LTNLDRRPRK RARLGWDVLP EPPKAQLGLF CGQDVGNVTS YASSRQLTDL TSAPFTIKEV AQNGSPPRRE DDKDGHFVFE LGENLTSRYK
101: IHSKMGEGTF GQVLECWDRE RKEMVAIKIV RGMKKYRDAA MIEVEMLQQL GKHDNGNRCV QIWNWFDYRN HICIVFEKLG PSLYDFLRKN NYRSFPIDLV
201: REIGRQLLDC VAFMHDLRLI HTDLKPENIL LTSPEYVKVP DYKVSSRSPK DGSYYKRIPK SSAIKVIDFG STTYDRQNQT YVVSTRHYRA PEVILGLGWS
301: YPCDIWSVGC ILVELCSGEA LFQTHENLEH LAMMEKVLGP LPQHMLKRVD RQAEKYVRRG RLDWPEGATS RDSIKAVLKL ARLQNIIMQH VDHSAGDLIN
401: LLQGLLRYDP SERLTAREAL RHPFFTRDHL RR

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.