Factsheet for PGSC0003DMT400006951

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008790.2.1	Tomato	cytosol	96.16	94.95
PGSC0003DMT400021639	Potato	nucleus	74.95	78.1
KRH20002	Soybean	nucleus	67.46	71.1
KRH32624	Soybean	nucleus	70.93	70.93
VIT_08s0007g04220.t01	Wine grape	nucleus	70.75	69.48
AT3G53030.1	Thale cress	nucleus	66.54	68.81
CDX78145	Canola	nucleus	66.0	66.0
PGSC0003DMT400018439	Potato	nucleus	64.53	64.65
Bra006970.1-P	Field mustard	nucleus	66.0	58.51
CDX73580	Canola	nucleus	66.18	57.1
PGSC0003DMT400003820	Potato	cytosol	45.34	55.61
PGSC0003DMT400045066	Potato	cytosol	44.42	54.24
PGSC0003DMT400079686	Potato	cytosol	16.82	31.94
PGSC0003DMT400069308	Potato	golgi, vacuole	19.2	28.85
PGSC0003DMT400061423	Potato	nucleus	21.75	27.61
PGSC0003DMT400030615	Potato	nucleus	21.57	27.51
PGSC0003DMT400046853	Potato	cytosol	21.02	26.62
PGSC0003DMT400043636	Potato	cytosol	20.48	17.13
PGSC0003DMT400053226	Potato	mitochondrion	20.29	13.28
PGSC0003DMT400033770	Potato	mitochondrion	21.39	11.28
PGSC0003DMT400079685	Potato	nucleus	2.38	1.49
PGSC0003DMT400068117	Potato	nucleus	1.1	1.42
PGSC0003DMT400069307	Potato	nucleus	2.19	1.37

Protein Annotations

EntrezGene:102601887	MapMan:18.4.3.5	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M0ZS82	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400002693	PGSC:PGSC0003DMG400002693	EnsemblPlants:PGSC0003DMT400006951
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24055	PANTHER:PTHR24055:SF228	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295436A	RefSeq:XP_006341191.1
SEG:seg	:	:	:	:	:

Description

Srpk [Source:PGSC_GENE;Acc:PGSC0003DMG400002693]

Coordinates

chr9:+:4165168..4171658

Molecular Weight (calculated)

61595.2 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.518

Length

547 amino acids

Sequence
(BLAST)

001: MEGFNQERRL NAAAVEVVEV EESSDDCSSE DEGTDDYRRG GYHAVRIGDS FNGGRYVVQS KLGWGHFSTV WLAWDTLMSQ FVALKVQKSA QHYTEAAMDE
101: ITILKQIAEC DQDDKKCVVK LLDNFKHSGP NGQHVCMVFE YLGDNLLTLL KYTDYRGLPI HMVKELCYHV LVGLDYLHRQ LSIIHTDLKP ENILLCSTID
201: PSKDPRKSGT PLILSSHKDI TMLDGGSVKG YVTSNGNLTK NHNKKIRRKA KQAAQCFVGK EASLGTKGGQ DSSASAESSF NAKSNSDMLN SSNRMSNADA
301: AKGSGKEYEG PKRGSRSTRR KLLEAIDLKC KVVDFGSACW TYKQFTDDIQ TRQYRCPEVI VGSKYSTSAD LWSFACICFE LATGDVLFDP HSGDNFDRDE
401: DHLALMMELL GMMPRKIALG GRYSRDLFNR HGDLRHIRRL RFWPLKKVLV EKYELSEQDA KDLSDFLVPI LDFVPEKRPT AAQCLLHPWI NAGPRLLELS
501: LPDAQSKAVD TLNSEQTKKQ NEEEREAMEV GIGKIAINKN MKNFRSY

Best Arabidopsis Sequence Match ( AT3G53030.1 )
(BLAST)

001: MEAEKWNSDG GEYTSEDEGT EDYRRGGYHA VRIGDSFKTG RYVVQSKLGW GHFSTVWLSW DTQSSRYVAL KVQKSAQHYT EAAMDEITIL QQIAEGDTDD
101: TKCVVKLLDH FKHSGPNGQH VCMVFEYLGD NLLTLIKYSD YRGLPIPMVK EICYHMLVGL DYLHKQLSII HTDLKPENVL LPSTIDPSKD PRKSGAPLVL
201: PTDKDNTVVD SNGDFVKNQK TGSHRKAKLS AQGHAENKGN TESDKVRGVG SPVNGKQCAA EKSVEEDCPS TSDAIELDGS EKGKQGGKKG SRSSRRHLVA
301: SADLKCKLVD FGNACWTYKQ FTSDIQTRQY RCPEVILGSK YSTSADLWSF ACICFELVTG DVLFDPHSGD NYDRDEDHLA LMMELLGMMP RKIALGGRYS
401: RDFFNRHGDL RHIRRLRFWP MNKVLTEKYE FSEQDANDLS DFLVSILDFV PEKRPTAAQC LLHPWINSGP RSIKPSLKDE NSDKLDTEKN KRENEEQEAV
501: EVKMGNVVIS SLDSKPGMSQ SSSTLKLAI

Arabidopsis Description

SRPK4Ser/arg-rich protein kinase 4 [Source:UniProtKB/TrEMBL;Acc:F4J982]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.