Factsheet for PGSC0003DMT400061423

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g02640.t01	Wine grape	nucleus	84.45	84.85
GSMUA_Achr5P29170_001	Banana	nucleus	80.28	79.36
KRH67569	Soybean	nucleus	81.44	79.05
GSMUA_Achr9P03190_001	Banana	nucleus	79.35	78.44
Os01t0837900-01	Rice	nucleus	78.65	78.11
KXG33666	Sorghum	cytosol	78.42	77.88
HORVU6Hr1G061750.11	Barley	nucleus	77.73	77.01
TraesCS6D01G223400.1	Wheat	nucleus	77.49	76.96
TraesCS6A01G241200.1	Wheat	cytosol	77.49	76.96
TraesCS6B01G283400.1	Wheat	nucleus	77.03	76.5
Zm00001d042938_P003	Maize	cytosol	78.42	75.45
Bra007012.1-P	Field mustard	cytosol	76.33	74.6
KRG95853	Soybean	cytosol	49.65	74.56
AT3G53570.1	Thale cress	cytosol	78.65	72.59
CDX78188	Canola	cytosol	76.33	72.31
CDX73543	Canola	nucleus	77.03	72.02
PGSC0003DMT400046853	Potato	cytosol	71.46	71.3
PGSC0003DMT400030615	Potato	nucleus	69.37	69.7
CDX76200	Canola	endoplasmic reticulum, plasma membrane, plastid	20.65	64.96
CDY52749	Canola	nucleus	76.1	40.39
CDY07581	Canola	nucleus	75.87	38.98
PGSC0003DMT400079686	Potato	cytosol	22.74	34.03
PGSC0003DMT400069308	Potato	golgi, vacuole	25.06	29.67
PGSC0003DMT400003820	Potato	cytosol	24.59	23.77
PGSC0003DMT400045066	Potato	cytosol	24.36	23.44
PGSC0003DMT400021639	Potato	nucleus	27.38	22.48
PGSC0003DMT400006951	Potato	mitochondrion, nucleus	27.61	21.75
PGSC0003DMT400018439	Potato	nucleus	26.68	21.06
PGSC0003DMT400043636	Potato	cytosol	25.52	16.82
PGSC0003DMT400053226	Potato	mitochondrion	26.91	13.88
PGSC0003DMT400033770	Potato	mitochondrion	27.61	11.48
PGSC0003DMT400079685	Potato	nucleus	2.55	1.26
PGSC0003DMT400069307	Potato	nucleus	2.32	1.14
PGSC0003DMT400068117	Potato	nucleus	0.93	0.95

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.2	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M1C7G6	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG401023904	PGSC:PGSC0003DMG401023904	EnsemblPlants:PGSC0003DMT400061423
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF44	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296709B	:	:	:

Description

Serine/threonine-protein kinase AFC1 [Source:PGSC_GENE;Acc:PGSC0003DMG401023904]

Coordinates

chr9:-:7493061..7503273

Molecular Weight (calculated)

50251.0 Da

IEP (calculated)

9.188

GRAVY (calculated)

-0.413

Length

431 amino acids

Sequence
(BLAST)

001: MEIQPLMEFP RRNIDKRPRK RPRLTWDVGP PILKVLPTIY CGQEFGNGAG LNYAYSSIYY KGIPHNGSPP RRPDDKDGHY VFSIGENLTR RYRILGKMGE
101: GTFGRVLECL DNETKELVAI KVVRSIHKYR EAAMIEIDVL QKFVRHDLGG KRCVQIRNWF DYRNHICIVF EKLGPSLYDF LRKNSYRSFP IDLVREFGRQ
201: LLESVAFMHD LRLIHTDLKP ENILLVSSEY IKVPDYKFLL RPVKDGSYFK NVPKSSSIKL IDFGSTTFEH QDHTYVVSTR HYRAPEVILG LGWNYPCDMW
301: SVGCILVELC SGEALFQTHE NLEHLAMMEK VLGPLPQHMT IRADHHAEKY FRRGARLDWP ERATSSESMR AVWKLPRLPN LIMQHVDHSA GDLIDLLQGL
401: LCYDPTERLK AREALRHPFF SRDLRRCGYP M

Best Arabidopsis Sequence Match ( AT3G53570.1 )
(BLAST)

001: MQSSVYRDKA SSIAMILETQ RNVEFPHRIV DKRPRKRPRL TWDAAPPLLP PPPPPTVFQP PLYYGPEFAS GLVPNFVYPN MFYNGLPRQG SPPWRPDDKD
101: GHYVFVVGDT LTPRYQILSK MGEGTFGQVL ECFDNKNKEV VAIKVIRSIN KYREAAMIEI DVLQRLTRHD VGGSRCVQIR NWFDYRNHIC IVFEKLGPSL
201: YDFLRKNSYR SFPIDLVREL GRQLLESVAY MHDLRLIHTD LKPENILLVS SEYIKIPDYK FLSRPTKDGS YFKNLPKSSA IKLIDFGSTT FEHQDHNYIV
301: STRHYRAPEV ILGVGWNYPC DLWSIGCILV ELCSGEALFQ THENLEHLAM MERVLGPLPP HMVLRADRRS EKYFRRGAKL DWPEGATSRD SLKAVWKLPR
401: LPNLIMQHVD HSAGDLIDLL QGLLRYDPTE RFKAREALNH PFFTRSREQS IPPFNPNPHP FLYNQKN

Arabidopsis Description

AFC1AT3G53570 protein [Source:UniProtKB/TrEMBL;Acc:B9DH08]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.