Factsheet for PGSC0003DMT400003820

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082550.2.1	Tomato	cytosol	96.64	96.64
PGSC0003DMT400045066	Potato	cytosol	85.65	85.27
VIT_07s0031g02130.t01	Wine grape	cytosol	79.15	79.5
CDY50618	Canola	cytosol	73.77	76.87
Bra002070.1-P	Field mustard	cytosol	74.89	76.43
CDY24345	Canola	cytosol	74.44	75.97
KRH39422	Soybean	cytosol	75.11	75.28
KRH07798	Soybean	cytosol	75.11	75.28
KRH28929	Soybean	nucleus	74.66	74.83
KRH76530	Soybean	nucleus	74.66	74.83
Bra017716.1-P	Field mustard	nucleus	71.75	74.42
CDY40627	Canola	nucleus	73.32	74.15
GSMUA_Achr4P11760_001	Banana	cytosol	61.21	73.78
AT2G17530.1	Thale cress	cytosol	72.65	73.64
CDX72542	Canola	nucleus	72.42	73.41
CDX69144	Canola	nucleus	72.2	73.02
CDX75507	Canola	nucleus	72.42	72.75
Bra011619.1-P	Field mustard	nucleus	72.42	72.75
GSMUA_Achr2P11360_001	Banana	cytosol	71.52	72.17
GSMUA_Achr5P11070_001	Banana	cytosol	65.7	71.46
AT4G35500.2	Thale cress	cytosol	69.96	71.07
GSMUA_Achr1P02800_001	Banana	cytosol	65.25	70.29
Bra028159.1-P	Field mustard	cytosol	57.17	69.29
EER99321	Sorghum	cytosol	63.68	66.98
Os09t0552300-01	Rice	cytosol	62.56	66.27
Zm00001d006308_P001	Maize	plastid	62.78	66.04
CDY07839	Canola	mitochondrion	42.38	64.51
HORVU5Hr1G002400.1	Barley	mitochondrion	38.56	64.42
TraesCS5D01G359900.2	Wheat	cytosol	59.42	62.65
TraesCS5B01G355100.1	Wheat	cytosol	59.19	62.12
TraesCS5A01G352900.1	Wheat	cytosol	59.19	61.97
HORVU5Hr1G087690.2	Barley	cytosol, plastid	60.09	54.14
PGSC0003DMT400021639	Potato	nucleus	54.26	46.1
PGSC0003DMT400006951	Potato	mitochondrion, nucleus	55.61	45.34
PGSC0003DMT400018439	Potato	nucleus	52.47	42.86
TraesCS2D01G246700.1	Wheat	nucleus	65.25	41.93
TraesCS2B01G258500.1	Wheat	nucleus	65.02	41.79
TraesCS2A01G244200.2	Wheat	nucleus	65.02	41.79
Zm00001d021342_P017	Maize	cytosol	65.7	40.14
EER99364	Sorghum	cytosol	65.25	39.48
HORVU2Hr1G053190.2	Barley	cytosol	64.57	38.71
Zm00001d006355_P011	Maize	cytosol	65.02	36.76
PGSC0003DMT400079686	Potato	cytosol	21.08	32.64
PGSC0003DMT400069308	Potato	golgi, vacuole	23.99	29.4
Os07t0472400-01	Rice	plasma membrane	33.41	27.44
PGSC0003DMT400030615	Potato	nucleus	24.89	25.87
PGSC0003DMT400061423	Potato	nucleus	23.77	24.59
PGSC0003DMT400046853	Potato	cytosol	23.54	24.31
PGSC0003DMT400043636	Potato	cytosol	25.34	17.28
PGSC0003DMT400053226	Potato	mitochondrion	23.54	12.56
PGSC0003DMT400033770	Potato	mitochondrion	24.66	10.61
PGSC0003DMT400069307	Potato	nucleus	2.24	1.14
PGSC0003DMT400079685	Potato	nucleus	2.02	1.03
PGSC0003DMT400068117	Potato	nucleus	0.67	0.71

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102601097	MapMan:18.4.3.5	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0ZMD6	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400001514
PGSC:PGSC0003DMG400001514	EnsemblPlants:PGSC0003DMT400003820	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24055
PANTHER:PTHR24055:SF138	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000295BFD0	RefSeq:XP_006340862.1	SEG:seg	:	:	:

Description

Srpk [Source:PGSC_GENE;Acc:PGSC0003DMG400001514]

Coordinates

chr2:+:38402523..38406073

Molecular Weight (calculated)

49937.8 Da

IEP (calculated)

8.738

GRAVY (calculated)

-0.465

Length

446 amino acids

Sequence
(BLAST)

001: MSCSSSSASE DEDEGFDSYR KGGYHAVRVG DSFSGGRYIA QRKLGWGEFS TVWLAYDTQS SGFVALKIQK SAPQFAQAAL HEIEVLSAIA NGDQSNSKYV
101: VRLIDHFKHT GPNGQHICMV FEFLGDSLLR LIKHNHYKGL ELNKVREICK CVLTGLDYLH GGLGIVHTDL KPENILLLTT INATKDPIRS GMTPILERPE
201: GNPNGGVTMN IIEKKLKQRA RRAAARISGR RSSMGGVGGT PKSNRSLDGI DLRCKVVDFG NACWEDKQFA QEIQTRQYRS PEVILQSGYS FSADMWSLAC
301: IAFELATGEM MFTPKGGEGF SEDEDHLAMK MELLGKIPRK IAVGGARSKD YFDRHGDLKR IRRLKYGCLD KLLVNKYRFS ESDAHEFTEF LSPLLDFEPE
401: KRPTAEQCLQ HPWLNFKNQK QTEVKNESGV ERVNIGMSKL QIKVGK

Best Arabidopsis Sequence Match ( AT2G17530.3 )
(BLAST)

001: MSCSSSSGSE EDDEGFDAYR KGGYHAVRIG DQFAGGRYIA QRKLGWGQFS TVWLAYDTRT SNYVALKIQK SALQFAQAAL HEIELLQAAA DGDPENTKCV
101: IRLIDDFKHA GPNGQHLCMV LEFLGDSLLR LIKYNRYKGM ELSKVREICK CILTGLDYLH RELGMIHSDL KPENILLCST IDPAKDPIRS GLTPILEKPE
201: GNQNGTSTMN LIEKKLKRRA KKAAAKISGR RVSIVGLSET PKKNKRNLDG IDMRCKVVDF GNGCWADNKF AEEIQTRQYR APEVILQSGY SYSVDMWSFA
301: CTAFELATGD MLFAPKEGNG YGEDEDHLAL MMELLGKMPR KIAIGGARSK DYFDRHGDLK RIRRLKYWPL DRLLIDKYKL PEAEAREFAD FLCPIMDFAP
401: EKRPTAQQCL QHPWLNLRTQ NNEDDIEGQM SNMQIKGSCS

Arabidopsis Description

At2g17530 [Source:UniProtKB/TrEMBL;Acc:Q9SHL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.