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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g085720.1.1 Tomato nucleus 94.48 94.84
PGSC0003DMT400006951 Potato mitochondrion, nucleus 78.1 74.95
VIT_08s0007g04220.t01 Wine grape nucleus 72.38 68.22
KRH20002 Soybean nucleus 66.29 67.05
KRH32624 Soybean nucleus 69.52 66.73
AT3G53030.1 Thale cress nucleus 66.86 66.35
PGSC0003DMT400018439 Potato nucleus 66.86 64.29
CDX78145 Canola nucleus 66.29 63.62
Bra006970.1-P Field mustard nucleus 66.67 56.73
CDX73580 Canola nucleus 66.67 55.2
PGSC0003DMT400003820 Potato cytosol 46.1 54.26
PGSC0003DMT400045066 Potato cytosol 46.29 54.24
PGSC0003DMT400079686 Potato cytosol 17.14 31.25
PGSC0003DMT400069308 Potato golgi, vacuole 19.43 28.02
PGSC0003DMT400061423 Potato nucleus 22.48 27.38
PGSC0003DMT400030615 Potato nucleus 21.9 26.81
PGSC0003DMT400046853 Potato cytosol 20.95 25.46
PGSC0003DMT400043636 Potato cytosol 20.57 16.51
PGSC0003DMT400053226 Potato mitochondrion 20.95 13.16
PGSC0003DMT400033770 Potato mitochondrion 23.05 11.67
PGSC0003DMT400069307 Potato nucleus 2.29 1.37
PGSC0003DMT400079685 Potato nucleus 2.1 1.26
PGSC0003DMT400068117 Potato nucleus 0.19 0.24
Protein Annotations
EntrezGene:102588730MapMan:18.4.3.5Gene3D:3.30.200.20ncoils:CoilGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0006464GO:GO:0006468
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0019538
InterPro:IPR000719InterPro:Kinase-like_dom_sfUniProt:M1AFG6PFAM:PF00069EnsemblPlantsGene:PGSC0003DMG400008395PGSC:PGSC0003DMG400008395
EnsemblPlants:PGSC0003DMT400021639ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR24055PANTHER:PTHR24055:SF228
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI00029482B5
RefSeq:XP_015164578.1SEG:seg::::
Description
Srpk [Source:PGSC_GENE;Acc:PGSC0003DMG400008395]
Coordinates
chr10:-:53110142..53115123
Molecular Weight (calculated)
59228.2 Da
IEP (calculated)
6.466
GRAVY (calculated)
-0.546
Length
525 amino acids
Sequence
(BLAST)
001: MEGFAEDQRL KEEEEMIEES SDDCTSEDEG TDDYRRGGYH AVRIGDTFKG GRYVVQSKLG WGHFSTVWLS WDTLMSQFVA LKVQKSAQHY TEAALDEITI
101: LKQIAEGDPE GGKSVVKLLD HFKHSGPNGQ HVCMVFEYLG DNLLSLIKYT GYRGLPIHMV KELCFHVLVG LDYLHRQLSI IHTDLKPENM LLCSTIDPSK
201: DPRKSGAPLI LPSNLDKASL ESGTVKGHVT FYANLTNNQK KVRRKSKETA QDFAGNTAVE SSQSNGDLPN DHLVGSANVD RLSNSDAATA SGKESVGPKK
301: GSGSRRRKTL ESVDLKCKLV DFGNACWTYK QFTDNIQTRQ YRCPEVILGS KYSTSADLWS FACICFELAT GDVLFDPHSG DNFDRDEDHL ALMMELLGTM
401: PRKIALGGRY SREFFNRHGD LRHIRRLRFW PLDKVLVEKY EFSEQDAKDM ADFLVPILDF DPEKRPTAAQ CLLHPWINTG PRNLEPRVPD ARSKATADTV
501: NFEQIKRDKE KKETMEVRMG NMAIV
Best Arabidopsis Sequence Match ( AT3G53030.1 )
(BLAST)
001: MEAEKWNSDG GEYTSEDEGT EDYRRGGYHA VRIGDSFKTG RYVVQSKLGW GHFSTVWLSW DTQSSRYVAL KVQKSAQHYT EAAMDEITIL QQIAEGDTDD
101: TKCVVKLLDH FKHSGPNGQH VCMVFEYLGD NLLTLIKYSD YRGLPIPMVK EICYHMLVGL DYLHKQLSII HTDLKPENVL LPSTIDPSKD PRKSGAPLVL
201: PTDKDNTVVD SNGDFVKNQK TGSHRKAKLS AQGHAENKGN TESDKVRGVG SPVNGKQCAA EKSVEEDCPS TSDAIELDGS EKGKQGGKKG SRSSRRHLVA
301: SADLKCKLVD FGNACWTYKQ FTSDIQTRQY RCPEVILGSK YSTSADLWSF ACICFELVTG DVLFDPHSGD NYDRDEDHLA LMMELLGMMP RKIALGGRYS
401: RDFFNRHGDL RHIRRLRFWP MNKVLTEKYE FSEQDANDLS DFLVSILDFV PEKRPTAAQC LLHPWINSGP RSIKPSLKDE NSDKLDTEKN KRENEEQEAV
501: EVKMGNVVIS SLDSKPGMSQ SSSTLKLAI
Arabidopsis Description
SRPK4Ser/arg-rich protein kinase 4 [Source:UniProtKB/TrEMBL;Acc:F4J982]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.