Factsheet for Bra006970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78145	Canola	nucleus	86.55	97.62
AT3G53030.1	Thale cress	nucleus	71.31	83.18
GSMUA_Achr8P26710_001	Banana	cytosol	51.86	72.23
GSMUA_Achr8P04590_001	Banana	nucleus	52.67	67.99
KRH32624	Soybean	nucleus	59.97	67.64
HORVU7Hr1G058230.1	Barley	cytosol	12.16	67.57
HORVU4Hr1G018630.1	Barley	cytosol, mitochondrion, nucleus, plastid	19.94	67.21
VIT_08s0007g04220.t01	Wine grape	nucleus	60.62	67.15
PGSC0003DMT400021639	Potato	nucleus	56.73	66.67
PGSC0003DMT400006951	Potato	mitochondrion, nucleus	58.51	66.0
KRH20002	Soybean	nucleus	55.43	65.9
HORVU3Hr1G049750.1	Barley	mitochondrion	19.45	65.57
Solyc10g085720.1.1	Tomato	nucleus	55.43	65.39
Solyc09g008790.2.1	Tomato	cytosol	58.51	65.16
Bra020218.1-P	Field mustard	nucleus	55.27	64.95
HORVU6Hr1G019910.4	Barley	cytosol	16.69	64.78
Bra002433.1-P	Field mustard	nucleus	54.78	63.06
Os03t0748400-01	Rice	nucleus	41.0	61.86
HORVU1Hr1G034750.1	Barley	cytosol	15.56	60.38
Zm00001d013273_P003	Maize	nucleus	54.94	60.11
EER93458	Sorghum	nucleus	55.11	59.96
TraesCS5B01G392200.1	Wheat	nucleus	54.62	59.96
TraesCS5A01G387100.1	Wheat	nucleus	54.46	59.79
TraesCS5D01G397000.1	Wheat	nucleus	54.46	59.79
HORVU5Hr1G094810.3	Barley	nucleus	53.81	59.18
HORVU2Hr1G091920.1	Barley	cytosol	27.88	56.77
HORVU1Hr1G094650.1	Barley	nucleus	26.26	55.1
HORVU7Hr1G090500.1	Barley	cytosol	26.42	55.07
HORVU4Hr1G059640.3	Barley	golgi, mitochondrion, plasma membrane	31.93	54.57
Bra017716.1-P	Field mustard	nucleus	37.76	54.19
Bra002070.1-P	Field mustard	cytosol	38.09	53.78
HORVU3Hr1G021690.1	Barley	cytosol	21.56	53.63
Bra011619.1-P	Field mustard	nucleus	38.57	53.6
Zm00001d034010_P002	Maize	mitochondrion, nucleus	54.13	52.76
HORVU3Hr1G021740.1	Barley	cytosol	21.88	52.73
HORVU1Hr1G082710.1	Barley	nucleus, plastid	35.01	51.31
HORVU2Hr1G066530.1	Barley	nucleus	33.55	51.24
Bra028159.1-P	Field mustard	cytosol	30.31	50.82
HORVU5Hr1G046420.1	Barley	nucleus	20.58	48.85
HORVU6Hr1G081350.5	Barley	nucleus	28.04	47.92
HORVU7Hr1G121360.1	Barley	cytosol, mitochondrion, nucleus	25.45	47.29
Bra011368.1-P	Field mustard	nucleus	18.64	28.89
Bra007012.1-P	Field mustard	cytosol	20.1	28.12
Bra003146.1-P	Field mustard	nucleus	20.1	27.62
Bra004984.1-P	Field mustard	cytosol	17.02	17.86
Bra017026.1-P	Field mustard	cytosol	15.56	17.27
Bra013829.1-P	Field mustard	nucleus	18.8	16.2
Bra035364.1-P	Field mustard	nucleus	20.75	14.13
Bra039487.1-P	Field mustard	nucleus	20.26	13.31
Bra025165.1-P	Field mustard	nucleus	18.64	12.76
Bra017346.1-P	Field mustard	nucleus	18.15	12.58
Bra015990.1-P	Field mustard	nucleus	18.31	10.47
Bra022240.1-P	Field mustard	nucleus	17.34	10.3
Bra003844.1-P	Field mustard	nucleus	17.99	9.34
Bra003145.1-P	Field mustard	plastid	1.78	3.35
Bra013830.1-P	Field mustard	plastid	0.16	0.34

Protein Annotations

Gene3D:1.10.10.10	MapMan:18.4.3.5	Gene3D:3.30.200.20	EnsemblPlantsGene:Bra006970	EnsemblPlants:Bra006970.1	EnsemblPlants:Bra006970.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0046983
InterPro:IPR000719	InterPro:IPR036388	InterPro:Kinase-like_dom_sf	UniProt:M4CRX8	PFAM:PF00069	PFAM:PF08100
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24055	PANTHER:PTHR24055:SF228	InterPro:Plant_MeTrfase_dimerisation
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF46785	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0002542EB9	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

AT3G53030 (E=5e-117) SRPK4 | SRPK4 (Ser/Arg-rich protein kinase 4); kinase/ protein kinase

Coordinates

chrA09:+:26578152..26580794

Molecular Weight (calculated)

70613.1 Da

IEP (calculated)

8.957

GRAVY (calculated)

-0.636

Length

617 amino acids

Sequence
(BLAST)

001: MEAEKWSSDG GEYTSEDEGT EDYRRGGYHA VRIGDSFKNG RYVVQSKLGW GHFSTVWLSW DTLSSRYVAL KVQKSAQHYT EAAMDEITIL QQIAEGDADD
101: TKCVVKLLDH FKHSGPNGQH VCMVFEYLGD NLLTLIKYSD YRGLPIRMVK EICYHMLVGL DYLHKELSII HTDLKPENVL LVSRIDPSKD PRKSGAPLVI
201: ASGKEKTVDS NGDFVKNHKK DVRKVKRSVD GKSSAAAEED CPSTSNGGEE GKQGGKKRSR SSRRHLVESA DLKCKLVDFG NACWTYKQFT SDIQTRQYRC
301: PEVILGSKYS TSADLWSFAC ICFELATGDV LFDPHSGDNY DRDEDHLALM MELLGMMPRK IALGGRYSRD LFNRHGDLRH IRRLRFWPMN KVLTEKYEFS
401: EQDANDLSDF LVSILDFVPE KRPTAAQSLL HPWINSVPRS LEPSVLTQDK EPEEKLDTER KKREKEEQEA MVVKMGNVAI SSPKSKPEKK MEEENKARLA
501: NMISVPMSLN AAVRLGIADA IWNSGANSPL SASEILPRLL LPSRESPAYT SYAHKLRRLL RTPQRRRHWI RREEILSNRR RKNACYRLKW SLLPSYAAYV
601: LQHHQEALMR AWYRCRS

Best Arabidopsis Sequence Match ( AT3G53030.1 )
(BLAST)

001: MEAEKWNSDG GEYTSEDEGT EDYRRGGYHA VRIGDSFKTG RYVVQSKLGW GHFSTVWLSW DTQSSRYVAL KVQKSAQHYT EAAMDEITIL QQIAEGDTDD
101: TKCVVKLLDH FKHSGPNGQH VCMVFEYLGD NLLTLIKYSD YRGLPIPMVK EICYHMLVGL DYLHKQLSII HTDLKPENVL LPSTIDPSKD PRKSGAPLVL
201: PTDKDNTVVD SNGDFVKNQK TGSHRKAKLS AQGHAENKGN TESDKVRGVG SPVNGKQCAA EKSVEEDCPS TSDAIELDGS EKGKQGGKKG SRSSRRHLVA
301: SADLKCKLVD FGNACWTYKQ FTSDIQTRQY RCPEVILGSK YSTSADLWSF ACICFELVTG DVLFDPHSGD NYDRDEDHLA LMMELLGMMP RKIALGGRYS
401: RDFFNRHGDL RHIRRLRFWP MNKVLTEKYE FSEQDANDLS DFLVSILDFV PEKRPTAAQC LLHPWINSGP RSIKPSLKDE NSDKLDTEKN KRENEEQEAV
501: EVKMGNVVIS SLDSKPGMSQ SSSTLKLAI

Arabidopsis Description

SRPK4Ser/arg-rich protein kinase 4 [Source:UniProtKB/TrEMBL;Acc:F4J982]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.