Factsheet for Bra003145.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003146.1-P	Field mustard	nucleus	3.35	2.45
Bra007012.1-P	Field mustard	cytosol	2.74	2.04
Bra039487.1-P	Field mustard	nucleus	5.18	1.81
Bra006970.1-P	Field mustard	nucleus	3.35	1.78
Bra035364.1-P	Field mustard	nucleus	4.88	1.77
Bra013829.1-P	Field mustard	nucleus	0.91	0.42
Bra002070.1-P	Field mustard	cytosol	0.3	0.23
Bra002433.1-P	Field mustard	nucleus	0.3	0.19
Bra017346.1-P	Field mustard	nucleus	0.3	0.11
Bra011619.1-P	Field mustard	nucleus	0.0	0.0
Bra011368.1-P	Field mustard	nucleus	0.0	0.0
Bra013830.1-P	Field mustard	plastid	0.0	0.0
Bra015990.1-P	Field mustard	nucleus	0.0	0.0
Bra017026.1-P	Field mustard	cytosol	0.0	0.0
Bra017716.1-P	Field mustard	nucleus	0.0	0.0
Bra020218.1-P	Field mustard	nucleus	0.0	0.0
Bra022240.1-P	Field mustard	nucleus	0.0	0.0
Bra025165.1-P	Field mustard	nucleus	0.0	0.0
Bra028159.1-P	Field mustard	cytosol	0.0	0.0
Bra004984.1-P	Field mustard	cytosol	0.0	0.0
Bra003844.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Bra003145.1	EnsemblPlants:Bra003145.1-P	EnsemblPlantsGene:Bra003145	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	PFscan:PS50005	PFscan:PS50293	SEG:seg
SMART:SM00028	SUPFAM:SSF48452	UniParc:UPI00025413B9	UniProt:M4CG13	MapMan:35.1	:

Description

AT3G53560 (E=4e-123) | chloroplast lumen common family protein

Coordinates

chrA07:-:11568936..11569922

Molecular Weight (calculated)

37513.1 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.480

Length

328 amino acids

Sequence
(BLAST)

001: MESLGRLQPF HLSFPKHPSF PPFRPLIRPN SSFKHTPIKA SSSKSQNPIT PLHKSTPFRL FKSTCITLTT AAALLFVNLR LKPPAIAAPV APPPSTESKE
101: HMTLEEEERA LEEHLATHPP DVDSLRSLME VKIRSRKLTE AVEVVDRLIK LEPEEPEWPV LKANIFTYSG EIDSATASFE EILAKDPLRV EAYHGLVMAY
201: SDAGLDLKEV ESRIEEAMLG CKKENNHNDF RDFKLLLAQI RVIEGKHSEA LKLYRELVKE EPGDFRPYLC QGVIYMLLKK KDKAEEQFDK FRELVPENHP
301: YREYFMDNLI ASKLFSEKTQ REMAGSES

Best Arabidopsis Sequence Match ( AT3G53560.2 )
(BLAST)

001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.