Factsheet for VIT_17s0000g09500.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0042g00400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24740.1	VIT_10s0042g00400.t01	AT4G31580.1	10593939

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57157	Soybean	cytosol	88.28	89.3
KRH63654	Soybean	nucleus	85.98	88.0
AT4G24740.1	Thale cress	nucleus	85.52	87.12
KRH54290	Soybean	cytosol, nucleus	85.06	87.06
PGSC0003DMT400046853	Potato	cytosol	86.44	87.04
GSMUA_Achr8P28600_001	Banana	cytosol	42.3	85.19
Solyc03g112050.2.1	Tomato	cytosol	75.86	85.05
GSMUA_Achr11P...	Banana	cytosol	65.98	84.66
VIT_01s0137g00580.t01	Wine grape	nucleus	82.3	82.87
KRH03872	Soybean	nucleus	89.66	82.63
Os12t0460800-03	Rice	cytosol	35.17	81.38
VIT_08s0040g02640.t01	Wine grape	nucleus	77.93	79.02
TraesCS6B01G238900.1	Wheat	cytosol	75.4	76.28
TraesCS6A01G210100.1	Wheat	cytosol	75.17	76.05
TraesCS6D01G193300.1	Wheat	cytosol	75.17	76.05
KXG35096	Sorghum	cytosol	71.72	73.58
HORVU5Hr1G091970.12	Barley	cytosol, mitochondrion	71.72	73.58
TraesCS5A01G369500.2	Wheat	cytosol	71.72	73.58
TraesCS5B01G371800.1	Wheat	cytosol	71.72	73.58
TraesCS5D01G378900.2	Wheat	cytosol, mitochondrion	71.72	73.58
KXG30551	Sorghum	cytosol	75.4	73.54
GSMUA_Achr3P17160_001	Banana	cytosol	75.63	73.27
Zm00001d017096_P005	Maize	cytosol	74.02	72.36
Zm00001d005361_P007	Maize	cytosol, plastid	69.89	72.04
Zm00001d050970_P003	Maize	cytosol	73.79	71.97
HORVU6Hr1G053760.52	Barley	cytosol	70.8	70.64
VIT_04s0008g04220.t01	Wine grape	nucleus	60.92	65.92
KXG37288	Sorghum	cytosol	57.01	64.75
CDY34307	Canola	plastid	84.6	50.62
CDY03422	Canola	plastid	84.37	50.48
Bra013829.1-P	Field mustard	nucleus	81.38	49.44
VIT_07s0031g02130.t01	Wine grape	cytosol	25.52	25.0
VIT_06s0061g01050.t01	Wine grape	nucleus	26.9	21.35
VIT_08s0007g04220.t01	Wine grape	nucleus	26.9	21.01
VIT_13s0067g00960.t01	Wine grape	cytosol	27.13	16.21
VIT_16s0039g00610.t01	Wine grape	plasma membrane, vacuole	26.9	12.87
VIT_01s0011g03350.t01	Wine grape	nucleus	26.67	10.64
VIT_01s0011g01590.t01	Wine grape	mitochondrion	27.82	6.68
CDY03423	Canola	cytosol, peroxisome, plastid	1.38	1.92
Bra013830.1-P	Field mustard	plastid	0.46	0.68

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100263937	wikigene:100263937	MapMan:18.4.3.2	Gene3D:3.30.200.20	EMBL:AM451429
ProteinID:CAN67679	ProteinID:CAN67679.1	ProteinID:CBI14926	ProteinID:CBI14926.3	UniProt:D7SHG7	EMBL:FN594950
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100263937	wikigene:LOC100263937
PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24058	PANTHER:PTHR24058:SF102	InterPro:Prot_kinase_dom
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC70644	UniParc:UPI00019851E0	ArrayExpress:VIT_17s0000g09500
EnsemblPlantsGene:VIT_17s0000g09500	EnsemblPlants:VIT_17s0000g09500.t01	unigene:Vvi.1597	RefSeq:XP_002279764	RefSeq:XP_002279764.1	:

Description

No Description!

Coordinates

chr17:-:11172396..11176645

Molecular Weight (calculated)

50335.9 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.481

Length

435 amino acids

Sequence
(BLAST)

001: MEMVERVTEF PHTHMDRRPR KRPRLGWDVL PQAPKAQLGM FCGQEVGNVA SFAPSKAHSD QTTSSMFVKG VARNGSPPWR EDDKDGHYIF ALGENLTSRY
101: KINSKMGEGT FGQVLECWDR ERKEMVAVKI VRGIKKYREA AMIEIEVLQQ LAKHDKGGNR CVQIRNWFDY RNHICIVFEK LGPSLYDFLR KNNYRSFPID
201: LVREIGRQLL ECVAFMHDLR LIHTDLKPEN ILLVSPEYVK VPDYKVSSRS PKDGSYFKRV PKSSAIKVID FGSTTYERQD QNYIVSTRHY RAPEVILGLG
301: WSYPCDIWSV GCILVELCTG EALFQTHENL EHLAMMERVL GPLPQHMLKR VDRHAEKYVR RGRLDWPEGA TSRESIKAVL KLPRLQNLIM QHVDHSAGDL
401: IHLLQGLLRY DPSDRLTALG ALRHPFFTRD HLRRS

Best Arabidopsis Sequence Match ( AT4G24740.1 )
(BLAST)

001: MEMERVHEFP HTHMDRRPRK RARLGWDVLP QATKAQVGMF CGQEIGNISS FASSGAPSDN SSSLCVKGVA RNGSPPWRED DKDGHYIFEL GDDLTPRYKI
101: YSKMGEGTFG QVLECWDRER KEMVAVKIVR GVKKYREAAM IEIEMLQQLG KHDKGGNRCV QIRNWFDYRN HICIVFEKLG SSLYDFLRKN NYRSFPIDLV
201: REIGWQLLEC VAFMHDLRMI HTDLKPENIL LVSSDYVKIP EYKGSRLQRD VCYKRVPKSS AIKVIDFGST TYERQDQTYI VSTRHYRAPE VILGLGWSYP
301: CDVWSVGCII VELCTGEALF QTHENLEHLA MMERVLGPFP QQMLKKVDRH SEKYVRRGRL DWPDGATSRD SLKAVLKLPR LQNLIMQHVD HSAGELINMV
401: QGLLRFDPSE RITAREALRH PFFARRR

Arabidopsis Description

AFC2At4g24740 [Source:UniProtKB/TrEMBL;Acc:Q1EBU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.