Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0069g00800.t01 | Wine grape | nucleus | 56.41 | 12.15 |
| EES07659 | Sorghum | nucleus | 48.72 | 11.66 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 51.28 | 11.11 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 51.28 | 10.99 |
| TraesCSU01G104300.1 | Wheat | nucleus | 48.72 | 10.44 |
| TraesCS7A01G152800.1 | Wheat | nucleus | 48.72 | 10.44 |
| TraesCS7B01G056600.2 | Wheat | nucleus | 48.72 | 10.38 |
| Os06t0187900-02 | Rice | nucleus | 48.72 | 10.27 |
| Zm00001d052062_P002 | Maize | extracellular | 46.15 | 10.11 |
| Os02t0789400-01 | Rice | nucleus | 46.15 | 9.73 |
| AT2G24590.1 | Thale cress | nucleus | 48.72 | 9.69 |
| EER87987 | Sorghum | nucleus | 46.15 | 9.68 |
| AT4G31580.1 | Thale cress | nucleus | 48.72 | 9.5 |
| Os02t0610600-01 | Rice | nucleus | 48.72 | 9.5 |
| TraesCS6A01G349500.1 | Wheat | nucleus | 46.15 | 9.28 |
| TraesCS6B01G382600.1 | Wheat | nucleus | 46.15 | 9.28 |
| TraesCS6D01G332000.1 | Wheat | nucleus | 46.15 | 9.28 |
| CDY45585 | Canola | nucleus | 46.15 | 9.18 |
| CDY20328 | Canola | nucleus | 46.15 | 9.18 |
| Zm00001d045076_P001 | Maize | nucleus | 48.72 | 9.09 |
| VIT_01s0026g00250.t01 | Wine grape | nucleus | 46.15 | 9.09 |
| Bra032082.1-P | Field mustard | nucleus | 46.15 | 8.87 |
| CDX72313 | Canola | nucleus | 43.59 | 8.63 |
| CDY13444 | Canola | nucleus | 43.59 | 8.54 |
| Bra023994.1-P | Field mustard | nucleus | 43.59 | 8.54 |
| Zm00001d018341_P007 | Maize | cytosol, nucleus, plasma membrane | 46.15 | 7.76 |
| Zm00001d017177_P007 | Maize | nucleus | 48.72 | 7.51 |
| HORVU6Hr1G083840.4 | Barley | plastid | 46.15 | 7.32 |
| Zm00001d051052_P001 | Maize | nucleus | 51.28 | 7.22 |
| TraesCS6A01G219000.2 | Wheat | nucleus | 43.59 | 6.88 |
| TraesCS6B01G248500.1 | Wheat | nucleus | 43.59 | 6.83 |
| HORVU7Hr1G031320.1 | Barley | nucleus | 48.72 | 6.6 |
| TraesCS6D01G202100.1 | Wheat | nucleus | 43.59 | 6.32 |
| OQU85289 | Sorghum | plastid | 48.72 | 5.99 |
| Zm00001d004066_P001 | Maize | cytosol, golgi, nucleus | 10.26 | 2.63 |
| Zm00001d045330_P001 | Maize | nucleus | 10.26 | 2.63 |
| Zm00001d028789_P001 | Maize | cytosol | 10.26 | 1.8 |
Protein Annotations
| ArrayExpress:VIT_10s0042g00400 | EMBL:FN595766 | EnsemblPlants:VIT_10s0042g00400.t01 | EnsemblPlantsGene:VIT_10s0042g00400 | ProteinID:CBI29017 | ProteinID:CBI29017.3 |
| UniParc:UPI0001BE310D | UniProt:D7TEU4 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr10:+:13266843..13266962
Molecular Weight (calculated)
4743.9 Da
IEP (calculated)
6.328
GRAVY (calculated)
0.433
Length
39 amino acids
Sequence
(BLAST)
(BLAST)
1: MQTIFISEFL NFLKCFMCSV WVARRPPGYA FIDFDDRMF
001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
Arabidopsis Description
RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.