Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g00340.t01 | |
| VIT_06s0004g05220.t01 | |
| VIT_08s0040g02860.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32660.1 | VIT_01s0010g00340.t01 | AT1G30860.1 | 21798944 |
| AT4G32660.1 | VIT_06s0004g05220.t01 | AT2G29210.1 | 21798944 |
| AT4G32660.1 | VIT_08s0040g02860.t01 | AT2G37340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61991 | Soybean | cytosol | 65.42 | 80.43 |
| KRH52649 | Soybean | nucleus | 79.85 | 79.65 |
| Os01t0590900-01 | Rice | nucleus | 74.88 | 77.58 |
| TraesCS3D01G214800.2 | Wheat | cytosol | 73.63 | 76.29 |
| TraesCS3B01G242600.2 | Wheat | cytosol | 73.63 | 76.29 |
| TraesCS3A01G212200.2 | Wheat | cytosol | 73.38 | 76.03 |
| EES00987 | Sorghum | mitochondrion | 72.89 | 75.91 |
| AT4G32660.1 | Thale cress | nucleus | 73.13 | 73.5 |
| CDX68873 | Canola | nucleus | 71.64 | 72.18 |
| Bra011368.1-P | Field mustard | nucleus | 71.39 | 72.11 |
| CDX75268 | Canola | nucleus | 71.39 | 72.11 |
| Zm00001d044338_P003 | Maize | mitochondrion | 69.15 | 70.92 |
| HORVU3Hr1G051340.19 | Barley | golgi, plasma membrane, plastid | 73.63 | 70.48 |
| GSMUA_Achr8P04030_001 | Banana | mitochondrion | 77.36 | 67.61 |
| KRG94066 | Soybean | cytosol | 22.14 | 67.42 |
| VIT_08s0040g02640.t01 | Wine grape | nucleus | 65.92 | 61.77 |
| VIT_17s0000g09500.t01 | Wine grape | nucleus | 65.92 | 60.92 |
| VIT_01s0137g00580.t01 | Wine grape | nucleus | 64.18 | 59.72 |
| Zm00001d011258_P001 | Maize | cytosol, nucleus, plasma membrane | 56.97 | 57.83 |
| VIT_07s0031g02130.t01 | Wine grape | cytosol | 26.37 | 23.87 |
| VIT_08s0007g04220.t01 | Wine grape | nucleus | 29.6 | 21.36 |
| VIT_06s0061g01050.t01 | Wine grape | nucleus | 28.36 | 20.8 |
| VIT_13s0067g00960.t01 | Wine grape | cytosol | 26.62 | 14.7 |
| VIT_16s0039g00610.t01 | Wine grape | plasma membrane, vacuole | 28.36 | 12.54 |
| VIT_01s0011g03350.t01 | Wine grape | nucleus | 28.86 | 10.64 |
| VIT_01s0011g01590.t01 | Wine grape | mitochondrion | 26.87 | 5.96 |
Protein Annotations
| Gene3D:1.10.510.10 | EntrezGene:100261084 | wikigene:100261084 | MapMan:18.4.3.2 | Gene3D:3.30.200.20 | ProteinID:CBI20925 |
| ProteinID:CBI20925.3 | UniProt:D7SUH6 | EMBL:FN595231 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004672 | GO:GO:0004674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0046777 | InterPro:IPR000719 | InterPro:Kinase-like_dom_sf | EntrezGene:LOC100261084 | wikigene:LOC100261084 | PFAM:PF00069 |
| ScanProsite:PS00108 | PFscan:PS50011 | PANTHER:PTHR24058 | PANTHER:PTHR24058:SF44 | InterPro:Prot_kinase_dom | SMART:SM00220 |
| SUPFAM:SSF56112 | InterPro:Ser/Thr_kinase_AS | UniParc:UPI0001982FBC | ArrayExpress:VIT_04s0008g04220 | EnsemblPlantsGene:VIT_04s0008g04220 | EnsemblPlants:VIT_04s0008g04220.t01 |
| unigene:Vvi.23754 | RefSeq:XP_002284488 | RefSeq:XP_002284488.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:+:3580636..3584994
Molecular Weight (calculated)
46373.0 Da
IEP (calculated)
9.459
GRAVY (calculated)
-0.395
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSMGLGSVV EKERSRKRRR LAWDVAPSQQ READRLPTAV NHESLRRQSP PRRDDDREGH YVFGLGENLT PRYKILSKMG EGTFGRVLEC WDRDTREYVA
101: IKVVRSISKY RDAAMVEIGV LQQLVKNDKC RLRCVQIQHW FDYRNHICIV FEKLGPSLFD FLKRNKYCPF PVDLVREFGR QLLESVAYVH DLCLIHTDLK
201: PENILLVSSE CIKLPSSKRF SSDETHFRCL PKSSAIKLID FGSTAYDNQN HSSIVSTRHY RAPEVILGLG WSYPCDLWSV GCILVELCVG EALFQTHENL
301: EHLAMMERVL GPLPEHMIRR ASRSVEKYFR GGSRLNWPEG AVSRESIRAV KKLDRLKDMV LQHVGSSRSS LTDLLYGLLK FDPAQRLTAR QALNHPFFKN
401: PT
101: IKVVRSISKY RDAAMVEIGV LQQLVKNDKC RLRCVQIQHW FDYRNHICIV FEKLGPSLFD FLKRNKYCPF PVDLVREFGR QLLESVAYVH DLCLIHTDLK
201: PENILLVSSE CIKLPSSKRF SSDETHFRCL PKSSAIKLID FGSTAYDNQN HSSIVSTRHY RAPEVILGLG WSYPCDLWSV GCILVELCVG EALFQTHENL
301: EHLAMMERVL GPLPEHMIRR ASRSVEKYFR GGSRLNWPEG AVSRESIRAV KKLDRLKDMV LQHVGSSRSS LTDLLYGLLK FDPAQRLTAR QALNHPFFKN
401: PT
001: MIANGFESMD KERVRKRPRM TWDEAPAEPE AKRAVIKGHG SDGRILSPPL RDDDRDGHYV FSLRDNLTPR YKILSKMGEG TFGRVLECWD RDTKEYVAIK
101: IIRSIKKYRD AAMIEIDVLQ KLVKSDKGRT RCVQMKNWFD YRNHICIVFE KLGPSLFDFL KRNKYSAFPL ALVRDFGCQL LESVAYMHEL QLVHTDLKPE
201: NILLVSSENV KLPDNKRSAA NETHFRCLPK SSAIKLIDFG STVCDNRIHH SIVQTRHYRS PEVILGLGWS YQCDLWSIGC ILFELCTGEA LFQTHDNLEH
301: LAMMERALGP LPEHMTRKAS RGAEKYFRRG CRLNWPEGAN SRESIRAVKR LDRLKDMVSK HVDNTRSRFA DLLYGLLAYD PSERLTANEA LDHPFFKSSS
101: IIRSIKKYRD AAMIEIDVLQ KLVKSDKGRT RCVQMKNWFD YRNHICIVFE KLGPSLFDFL KRNKYSAFPL ALVRDFGCQL LESVAYMHEL QLVHTDLKPE
201: NILLVSSENV KLPDNKRSAA NETHFRCLPK SSAIKLIDFG STVCDNRIHH SIVQTRHYRS PEVILGLGWS YQCDLWSIGC ILFELCTGEA LFQTHDNLEH
301: LAMMERALGP LPEHMTRKAS RGAEKYFRRG CRLNWPEGAN SRESIRAVKR LDRLKDMVSK HVDNTRSRFA DLLYGLLAYD PSERLTANEA LDHPFFKSSS
Arabidopsis Description
AFC3At4g32660 [Source:UniProtKB/TrEMBL;Acc:A1L4Y9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.