CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95876
KRG95883
KRH12155
KRH24737
KRH29744
KRH37161
KRH42195
KRH58317
KRH67593
KRH67596

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32660.1	KRH12155	AT1G30860.1	21798944
AT4G32660.1	KRH37161	AT1G30860.1	21798944
AT4G32660.1	KRH24737	AT2G29210.1	21798944
AT4G32660.1	KRH29744	AT2G29210.1	21798944
AT4G32660.1	KRG95876	AT2G37340.1	21798944
AT4G32660.1	KRG95883	AT2G37340.1	21798944
AT4G32660.1	KRH42195	AT2G37340.1	21798944
AT4G32660.1	KRH58317	AT2G37340.1	21798944
AT4G32660.1	KRH67593	AT2G37340.1	21798944
AT4G32660.1	KRH67596	AT2G37340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61991	Soybean	cytosol	75.93	93.58
KRG94066	Soybean	cytosol	27.54	84.09
VIT_04s0008g04220.t01	Wine grape	nucleus	79.65	79.85
Os01t0590900-01	Rice	nucleus	74.19	77.06
EES00987	Sorghum	mitochondrion	73.2	76.42
TraesCS3D01G214800.2	Wheat	cytosol	73.45	76.29
TraesCS3B01G242600.2	Wheat	cytosol	73.45	76.29
TraesCS3A01G212200.2	Wheat	cytosol	73.2	76.03
AT4G32660.1	Thale cress	nucleus	70.47	71.0
HORVU3Hr1G051340.19	Barley	golgi, plasma membrane, plastid	73.7	70.71
CDX68873	Canola	nucleus	68.98	69.67
Zm00001d044338_P003	Maize	mitochondrion	67.74	69.64
Bra011368.1-P	Field mustard	nucleus	68.73	69.6
CDX75268	Canola	nucleus	68.73	69.6
GSMUA_Achr8P04030_001	Banana	mitochondrion	76.18	66.74
KRH54290	Soybean	cytosol, nucleus	64.76	61.41
KRH63654	Soybean	nucleus	64.52	61.18
KRH57157	Soybean	cytosol	64.02	60.0
Zm00001d011258_P001	Maize	cytosol, nucleus, plasma membrane	57.82	58.84
KRH67569	Soybean	nucleus	64.27	58.33
KRG95853	Soybean	cytosol	39.45	55.4
KRH03872	Soybean	nucleus	64.02	54.66
KRH63030	Soybean	cytosol, nucleus	19.85	30.19
KRH39422	Soybean	cytosol	27.54	24.94
KRH07798	Soybean	cytosol	27.3	24.72
KRH28929	Soybean	nucleus	27.05	24.49
KRH76530	Soybean	nucleus	26.3	23.82
KRH26554	Soybean	nucleus	29.03	21.47
KRH22757	Soybean	nucleus	28.78	21.25
KRH32624	Soybean	nucleus	28.54	21.02
KRH20002	Soybean	nucleus	24.81	19.27
KRH25147	Soybean	mitochondrion	26.05	18.99
KRH14940	Soybean	nucleus	26.3	14.93
KRH73194	Soybean	nucleus	26.8	14.86
KRH07651	Soybean	nucleus	29.03	12.3
KRH45354	Soybean	nucleus	29.03	12.23
KRH35970	Soybean	nucleus	28.78	11.63
KRG90793	Soybean	nucleus	28.54	11.63
KRH60590	Soybean	nucleus	26.05	9.55
KRH09504	Soybean	nucleus	26.55	9.08
KRH38978	Soybean	nucleus	26.3	9.05
KRH41895	Soybean	nucleus	24.32	8.77
KRH75392	Soybean	nucleus	13.4	6.29

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100782453	MapMan:18.4.3.2	Gene3D:3.30.200.20	EMBL:ACUP02003425	EnsemblPlantsGene:GLYMA_06G080600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	UniProt:I1K978	InterPro:IPR000719	ProteinID:KRH52648.1	EnsemblPlants:KRH52649
ProteinID:KRH52649	ProteinID:KRH52649.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24058	PANTHER:PTHR24058:SF44	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI000233A73A	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:6177922..6181644

Molecular Weight (calculated)

46585.2 Da

IEP (calculated)

9.387

GRAVY (calculated)

-0.475

Length

403 amino acids

Sequence
(BLAST)

001: MVSVEKIHIE RERTRKRPRL AWDVAPPSAS EAQRALPVPG DEGFERKHVS PPKRDDDREG HYVFNLGENL TPRYKILGKM GEGTFGRVLE CWDRQTREYV
101: AIKVVRSIRK YRDAAMLEID VLQQLAKNDR GSSRCVQIRN WFDYRNHICI VFEKLGPSLF DFLKRNKYCP FPVDLVREFG RQLLESVAYM HELRLIHTDL
201: KPENILLVSS EYVKLPSYKR ISSDEMQFRC LPKSSAIKLI DFGSTAYDNQ NHSSIVSTRH YRAPEIILGL GWSYPCDLWS VGCILIELCS GEALFQTHEN
301: LEHLAMMERV LGPIPEHMIC RSNKGAEKYF KRGSRLRWPE GAVSRESISA VKKLGHLKDI VSRNVDSSRS SLTELLHGLL TYDPTKRITA RQALDHPFFR
401: NPT

Best Arabidopsis Sequence Match ( AT4G32660.3 )
(BLAST)

001: MDKERVRKRP RMTWDEAPAE PEAKRAVIKG HGSDGRILSP PLRDDDRDGH YVFSLRDNLT PRYKILSKMG EGTFGRVLEC WDRDTKEYVA IKIIRSIKKY
101: RDAAMIEIDV LQKLVKSDKG RTRCVQMKNW FDYRNHICIV FEKLGPSLFD FLKRNKYSAF PLALVRDFGC QLLESVAYMH ELQLVHTDLK PENILLVSSE
201: NVKLPDNKRS AANETHFRCL PKSSAIKLID FGSTVCDNRI HHSIVQTRHY RSPEVILGLG WSYQCDLWSI GCILFELCTG EALFQTHDNL EHLAMMERAL
301: GPLPEHMTRK ASRGAEKYFR RGCRLNWPEG ANSRESIRAV KRLDRLKDMV SKHVDNTRSR FADLLYGLLA YDPSERLTAN EALDHPFFKS SS

Arabidopsis Description

AFC3At4g32660 [Source:UniProtKB/TrEMBL;Acc:A1L4Y9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.