Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH67596 | Soybean | nucleus | 71.27 | 65.55 |
| KRG95883 | Soybean | nucleus | 67.27 | 62.29 |
| KRG95876 | Soybean | nucleus | 64.0 | 61.32 |
| KRH67593 | Soybean | endoplasmic reticulum | 63.64 | 60.98 |
| KRH58317 | Soybean | nucleus | 45.82 | 57.53 |
| CDX73550 | Canola | nucleus | 49.45 | 47.89 |
| CDX78183 | Canola | nucleus | 49.09 | 47.7 |
| AT2G37340.1 | Thale cress | nucleus | 49.82 | 47.24 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 48.36 | 46.83 |
| CDX79732 | Canola | nucleus | 49.82 | 46.76 |
| CDX80835 | Canola | nucleus | 44.73 | 46.42 |
| CDY07586 | Canola | mitochondrion, nucleus | 48.0 | 45.83 |
| CDY11223 | Canola | nucleus | 43.64 | 45.63 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 44.0 | 45.49 |
| Bra007004.1-P | Field mustard | nucleus | 49.09 | 45.45 |
| CDY52755 | Canola | mitochondrion, nucleus | 47.64 | 45.02 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 47.64 | 45.02 |
| KXG21152 | Sorghum | nucleus | 50.18 | 44.23 |
| Bra023114.1-P | Field mustard | nucleus | 50.55 | 43.99 |
| Solyc09g005980.2.1 | Tomato | nucleus | 50.18 | 43.81 |
| CDY46773 | Canola | nucleus | 50.18 | 43.67 |
| EES00292 | Sorghum | nucleus | 46.91 | 43.58 |
| PGSC0003DMT400061471 | Potato | nucleus | 49.45 | 43.17 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 49.82 | 42.41 |
| Bra005756.1-P | Field mustard | nucleus | 35.27 | 42.17 |
| GSMUA_Achr10P... | Banana | nucleus | 49.45 | 41.85 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 50.55 | 41.25 |
| Os01t0155600-01 | Rice | nucleus | 48.36 | 41.05 |
| Os03t0285900-01 | Rice | nucleus | 48.73 | 40.61 |
| TraesCS1B01G065900.2 | Wheat | nucleus | 49.82 | 40.18 |
| TraesCS1D01G051900.1 | Wheat | nucleus | 49.45 | 39.77 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 49.09 | 39.47 |
| KXG21387 | Sorghum | nucleus | 37.82 | 39.25 |
| Zm00001d011004_P008 | Maize | nucleus | 47.64 | 38.76 |
| TraesCS3D01G134500.1 | Wheat | nucleus | 45.45 | 38.58 |
| EES18924 | Sorghum | nucleus | 47.64 | 38.42 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 45.09 | 38.39 |
| Zm00001d037543_P001 | Maize | nucleus | 24.73 | 37.78 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 38.18 | 37.77 |
| Zm00001d011005_P005 | Maize | nucleus | 48.36 | 37.68 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 39.27 | 37.63 |
| TraesCS1D01G111000.2 | Wheat | nucleus | 39.27 | 37.63 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 45.09 | 37.24 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 40.36 | 37.12 |
| OQU77498 | Sorghum | nucleus | 14.91 | 36.94 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 48.73 | 36.41 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 46.55 | 34.5 |
| Os05t0162600-01 | Rice | nucleus | 38.18 | 31.07 |
| Zm00001d035551_P007 | Maize | nucleus | 39.64 | 27.81 |
| KRG96443 | Soybean | nucleus | 25.82 | 22.68 |
| KRH64312 | Soybean | nucleus | 21.82 | 22.47 |
| KRH53616 | Soybean | nucleus | 20.36 | 21.29 |
| KRH75557 | Soybean | cytosol | 8.36 | 20.72 |
| KXG21391 | Sorghum | nucleus | 29.82 | 20.5 |
| KRH68188 | Soybean | nucleus | 22.18 | 20.4 |
| KRG92904 | Soybean | nucleus | 20.36 | 20.29 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | UniProt:A0A0R0IPC8 | EMBL:ACUP02004791 | EnsemblPlantsGene:GLYMA_08G074600 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EnsemblPlants:KRH42195 |
| ProteinID:KRH42195 | ProteinID:KRH42195.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF21 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | SignalP:SignalP-noTM |
| UniParc:UPI0006ED9EEA | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:5694596..5697823
Molecular Weight (calculated)
30752.5 Da
IEP (calculated)
10.350
GRAVY (calculated)
-1.243
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVLVSVLL LVLQSWKKST MPRHDDKYSN TRLDVGHLSS MTRSRDLERV FSRYGRVQGV DMKNFFAFVD FGDPRDADDA RYNLDGREVE GRHVTVEFAK
101: GGPRGSWESS GQGQGPPTGP GRYCKTGDGK NKCFLSGERG HIEKNCKNSP KKLRSHSAHH GRRRDRSYSR DRSYSRSISP VGRERSPIRK HSASLDQSSP
201: QKRGVTSPGS DRLATRQDGS DYSGGPRKKS RSPARDCDEG GYDSPKVNGH SRSLRDDDKS PIDEDDDNHR RSLSP
101: GGPRGSWESS GQGQGPPTGP GRYCKTGDGK NKCFLSGERG HIEKNCKNSP KKLRSHSAHH GRRRDRSYSR DRSYSRSISP VGRERSPIRK HSASLDQSSP
201: QKRGVTSPGS DRLATRQDGS DYSGGPRKKS RSPARDCDEG GYDSPKVNGH SRSLRDDDKS PIDEDDDNHR RSLSP
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.