CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90774
KRG93223
KRH02172
KRH13056
KRH15102
KRH24737
KRH29744
KRH35987
KRH38014
KRH50944
KRH73034

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09140.1	KRG93223	AT1G53720.1	16497658
AT1G09140.1	KRH13056	AT1G53720.1	16497658
AT1G09140.1	KRH24737	AT2G29210.1	21798944
AT1G09140.1	KRH29744	AT2G29210.1	21798944
AT1G09140.1	KRH38014	AT3G13570.1	18674533
AT1G09140.1	KRH15102	AT3G55460.1	18674533
AT1G09140.1	KRH73034	AT3G55460.1	18674533
AT1G09140.1	KRG90774	AT5G04280.1	21798944
AT1G09140.1	KRH35987	AT5G04280.1	21798944
AT1G09140.1	KRH02172	AT5G18810.1	18674533
AT1G09140.1	KRH50944	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018581.1-P	Field mustard	cytosol	64.13	76.29
CDY66028	Canola	cytosol	65.58	71.54
Solyc01g099810.2.1	Tomato	nucleus	65.22	68.18
KXG32406	Sorghum	cytosol	63.04	67.18
VIT_14s0060g02290.t01	Wine grape	nucleus	69.2	66.32
AT1G09140.1	Thale cress	cytosol	63.04	64.93
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	59.06	64.43
TraesCS3B01G293100.1	Wheat	cytosol	59.42	64.31
TraesCS3D01G260200.1	Wheat	cytosol	59.06	63.92
TraesCS3A01G260000.1	Wheat	cytosol	58.7	63.53
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	58.33	63.39
EER94870	Sorghum	mitochondrion, nucleus	64.86	62.59
Os03t0344100-02	Rice	mitochondrion, nucleus	64.13	61.89
Zm00001d047498_P003	Maize	nucleus	63.41	61.4
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	63.04	61.27
TraesCS2D01G112200.1	Wheat	nucleus	63.04	61.27
KRH68188	Soybean	nucleus	66.3	61.2
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	63.41	61.19
KXG21829	Sorghum	nucleus	61.59	61.15
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	59.42	60.97
KRH53616	Soybean	nucleus	57.97	60.84
KRH64312	Soybean	nucleus	58.33	60.3
Os07t0673500-01	Rice	nucleus	64.49	60.14
Zm00001d040672_P013	Maize	nucleus	63.41	59.73
KRG96443	Soybean	nucleus	67.39	59.42
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	62.68	59.04
Zm00001d041673_P001	Maize	cytosol	24.28	58.77
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	62.32	58.7
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	62.32	58.31
TraesCS4A01G157700.1	Wheat	mitochondrion	61.96	57.77
CDX95008	Canola	nucleus	64.49	56.15
KRH75557	Soybean	cytosol	22.1	54.95
Os05t0364600-01	Rice	nucleus	63.04	54.55
GSMUA_Achr11P...	Banana	nucleus	66.3	52.89
GSMUA_Achr8P10150_001	Banana	nucleus	67.03	52.86
TraesCS2B01G130400.1	Wheat	nucleus	63.04	50.29
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	61.23	48.84
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	59.42	48.81
PGSC0003DMT400063701	Potato	nucleus	56.88	47.58
Os01t0316600-01	Rice	plastid	15.94	35.48
Zm00001d009821_P001	Maize	plastid	31.52	27.36
KRG95876	Soybean	nucleus	27.17	26.13
KRH67593	Soybean	endoplasmic reticulum	26.81	25.78
KRH67596	Soybean	nucleus	25.72	23.75
KRG95883	Soybean	nucleus	25.0	23.23
KRH42195	Soybean	endoplasmic reticulum	20.29	20.36
KRH58317	Soybean	nucleus	10.51	13.24

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	UniProt:A0A0R0ERJ1	EMBL:ACUP02012770	EnsemblPlantsGene:GLYMA_20G236800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006376	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016607	GO:GO:0035061	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRG92904	ProteinID:KRG92904	ProteinID:KRG92904.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43933	PANTHER:PTHR43933:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0003DEBEFD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46892521..46898679

Molecular Weight (calculated)

31677.1 Da

IEP (calculated)

10.300

GRAVY (calculated)

-0.771

Length

276 amino acids

Sequence
(BLAST)

001: MSGRSSRTIY VGNLPGDVRL REVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDARDAED AIQYRDGYNF DGFRLRVELA HGGRGYSSSV DRYSSYSGGS
101: GSRGVSRRSD YRVLVTGLPP SASWQDLKDH MRKAGDVCFS QVFRERGGMT GIVDYTNYDD MKYAIRKLDD SEFRNAFSRA FIRVREYDRG YSRSPSRDSR
201: RSYSRSLSRS PCISRSRSHS RSRSHSYSDR SRSWSPKPKH SRRSISLSRK VEGTMLKWIA AWPLNIQCSL GLTLVF

Best Arabidopsis Sequence Match ( AT1G09140.1 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.