Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32406 | Sorghum | cytosol | 83.62 | 94.59 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 73.72 | 84.71 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 73.38 | 84.31 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 73.04 | 83.92 |
| Bra018581.1-P | Field mustard | cytosol | 57.34 | 72.41 |
| CDY66028 | Canola | cytosol | 60.41 | 69.96 |
| Zm00001d041673_P001 | Maize | cytosol | 26.96 | 69.3 |
| Zm00001d047498_P003 | Maize | nucleus | 64.51 | 66.32 |
| Solyc01g099810.2.1 | Tomato | nucleus | 59.73 | 66.29 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 64.85 | 65.97 |
| AT1G09140.1 | Thale cress | cytosol | 59.73 | 65.3 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 74.06 | 64.58 |
| KRG92904 | Soybean | nucleus | 59.73 | 63.41 |
| CDX91319 | Canola | nucleus | 63.48 | 62.21 |
| GSMUA_Achr11P... | Banana | nucleus | 73.38 | 62.14 |
| CDX97264 | Canola | nucleus | 63.14 | 60.66 |
| KRG96443 | Soybean | nucleus | 64.51 | 60.38 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 62.8 | 59.74 |
| Bra018550.1-P | Field mustard | nucleus | 52.9 | 59.39 |
| CDY22050 | Canola | nucleus | 62.46 | 59.22 |
| Bra036267.1-P | Field mustard | nucleus | 62.8 | 58.97 |
| PGSC0003DMT400029666 | Potato | nucleus | 63.14 | 58.73 |
| CDY50385 | Canola | nucleus | 61.43 | 58.44 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 69.62 | 58.29 |
| AT1G02840.1 | Thale cress | nucleus | 59.73 | 57.76 |
| KRH68188 | Soybean | nucleus | 58.7 | 57.53 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 56.31 | 56.51 |
| AT4G02430.4 | Thale cress | nucleus | 56.31 | 56.51 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 66.21 | 56.07 |
| Solyc09g075090.1.1 | Tomato | nucleus | 57.68 | 55.41 |
| CDX95008 | Canola | nucleus | 57.68 | 53.31 |
| PGSC0003DMT400063701 | Potato | nucleus | 54.95 | 48.79 |
| Solyc06g009060.2.1 | Tomato | nucleus | 37.54 | 41.98 |
| Os01t0316600-01 | Rice | plastid | 17.06 | 40.32 |
| Zm00001d009821_P001 | Maize | plastid | 35.49 | 32.7 |
| Zm00001d011004_P008 | Maize | nucleus | 31.4 | 27.22 |
| Zm00001d037543_P001 | Maize | nucleus | 16.04 | 26.11 |
| Zm00001d011005_P005 | Maize | nucleus | 31.4 | 26.06 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 30.03 | 23.72 |
| Zm00001d035551_P007 | Maize | nucleus | 25.94 | 19.39 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | UniProt:A0A1D6MS43 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM31771.1 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00084478C6 | EnsemblPlantsGene:Zm00001d040672 | EnsemblPlants:Zm00001d040672_P013 | EnsemblPlants:Zm00001d040672_T013 | SEG:seg |
Description
Serine/arginine-rich-splicing factor SR34
Coordinates
chr3:-:57179717..57201014
Molecular Weight (calculated)
33524.9 Da
IEP (calculated)
9.914
GRAVY (calculated)
-0.798
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRNSRTIY VGNLPGDIRE REVEDLFYKY GRILDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYNF DGYRLRVELA HGGRGQSYSY DRSSSYSSAC
101: RGGVSRRSDF RVMVTGLPSS ASWQDLKDHM RRAGDVCFSD VYREAGETIG IVDYTNYDDM KYAIRKLDDS QFRNAFSRAY IRVREYDARS RSRSRSHSYS
201: RSPSYSRSRS PKYVYMLTNL ISKSDGSTNS FLLLFRSVSQ SPSSVDERSL SRSRSPISSP SHARYATSPR SRSASRSRSP VIASFQNNHL LCC
101: RGGVSRRSDF RVMVTGLPSS ASWQDLKDHM RRAGDVCFSD VYREAGETIG IVDYTNYDDM KYAIRKLDDS QFRNAFSRAY IRVREYDARS RSRSRSHSYS
201: RSPSYSRSRS PKYVYMLTNL ISKSDGSTNS FLLLFRSVSQ SPSSVDERSL SRSRSPISSP SHARYATSPR SRSASRSRSP VIASFQNNHL LCC
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.