Factsheet for PGSC0003DMT400063701

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400016115
PGSC0003DMT400043581
PGSC0003DMT400056014
PGSC0003DMT400069100
PGSC0003DMT400071935
PGSC0003DMT400079815
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09140.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT1G09140.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT1G09140.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT1G09140.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT1G09140.1	PGSC0003DMT400071935	AT2G29210.1	21798944
AT1G09140.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT1G09140.1	PGSC0003DMT400081835	AT3G13570.1	18674533
AT1G09140.1	PGSC0003DMT400043581	AT5G04280.1	21798944
AT1G09140.1	PGSC0003DMT400079815	AT5G04280.1	21798944
AT1G09140.1	PGSC0003DMT400016115	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099810.2.1	Tomato	nucleus	57.58	71.97
Bra018581.1-P	Field mustard	cytosol	46.06	65.52
TraesCS3D01G260200.1	Wheat	cytosol	47.58	61.57
KXG32406	Sorghum	cytosol	48.18	61.39
TraesCS3B01G293100.1	Wheat	cytosol	47.27	61.18
TraesCS3A01G260000.1	Wheat	cytosol	47.27	61.18
CDY66028	Canola	cytosol	46.36	60.47
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	44.85	58.5
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	44.85	58.27
Zm00001d041673_P001	Maize	cytosol	20.0	57.89
VIT_14s0060g02290.t01	Wine grape	nucleus	50.0	57.29
KRG92904	Soybean	nucleus	47.58	56.88
AT1G09140.1	Thale cress	cytosol	46.06	56.72
EER94870	Sorghum	mitochondrion, nucleus	49.09	56.64
Zm00001d047498_P003	Maize	nucleus	48.79	56.49
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	45.45	55.76
KXG21829	Sorghum	nucleus	46.67	55.4
Zm00001d040672_P013	Maize	nucleus	48.79	54.95
TraesCS2D01G112200.1	Wheat	nucleus	47.27	54.93
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	47.27	54.93
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	47.27	54.55
Os03t0344100-02	Rice	mitochondrion, nucleus	47.27	54.55
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	47.88	53.92
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	47.58	53.58
TraesCS4A01G157700.1	Wheat	mitochondrion	47.27	52.7
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	46.36	51.86
Os07t0673500-01	Rice	nucleus	46.36	51.69
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	45.15	51.03
PGSC0003DMT400029666	Potato	nucleus	47.88	50.16
GSMUA_Achr11P...	Banana	nucleus	52.12	49.71
Os05t0364600-01	Rice	nucleus	46.97	48.59
CDX95008	Canola	nucleus	46.36	48.27
GSMUA_Achr8P10150_001	Banana	nucleus	50.61	47.71
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	48.48	47.62
TraesCS2B01G130400.1	Wheat	nucleus	47.27	45.09
PGSC0003DMT400008347	Potato	cytosol	41.52	42.68
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	44.55	42.49
Os01t0316600-01	Rice	plastid	13.03	34.68
Zm00001d009821_P001	Maize	plastid	24.85	25.79
PGSC0003DMT400060435	Potato	nucleus	20.3	22.33
PGSC0003DMT400061471	Potato	nucleus	20.91	21.9

Protein Annotations

EntrezGene:102581715	MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1CB21	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400024759	PGSC:PGSC0003DMG400024759	EnsemblPlants:PGSC0003DMT400063701	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295DB16	SEG:seg

Description

Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024759]

Coordinates

chr1:-:77526265..77532888

Molecular Weight (calculated)

37601.3 Da

IEP (calculated)

4.891

GRAVY (calculated)

-0.511

Length

330 amino acids

Sequence
(BLAST)

001: MGRLSRTIYV GNLPGDIRER EVEDLFYKYG PIVEIDLKVP PRPPGYAFVE FEDPRDTDDA IRGRDGYDFD GRRLRVELAH GGRGSSSYDR HSSYSSGSHG
101: GFSRRSDYRV LVSGLPSSAS WQDLKDHMRR AGDVCFSQVF RDRDGMRGIV DYTNYDDMRY AIKKLDDSLF RNQFSRAYIR VCSLLWISMI RGIAIPGVQV
201: HIIQEAEVTQ EAGVLDEAIA ARAEDWSVMW EVLQAPSYQC QPESLLDEKL YKEMSLFKNE DYEISIKIQI STFTSTSLEA RKEPEPEQEQ ESVLFSLFGD
301: IGMRLLQKQS GDCNQNKVVC RLAGCEGTGF

Best Arabidopsis Sequence Match ( AT1G09140.1 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.