Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 93.9 | 94.54 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 93.22 | 93.86 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 92.88 | 92.57 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 85.08 | 87.76 |
| EER94870 | Sorghum | mitochondrion, nucleus | 83.05 | 85.66 |
| Zm00001d047498_P003 | Maize | nucleus | 82.03 | 84.91 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 78.98 | 81.47 |
| Bra018581.1-P | Field mustard | cytosol | 54.24 | 68.97 |
| CDY66028 | Canola | cytosol | 57.29 | 66.8 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 63.39 | 64.93 |
| CDX91319 | Canola | nucleus | 64.07 | 63.21 |
| PGSC0003DMT400029666 | Potato | nucleus | 67.46 | 63.17 |
| Solyc01g099810.2.1 | Tomato | nucleus | 56.27 | 62.88 |
| KRG92904 | Soybean | nucleus | 58.31 | 62.32 |
| AT1G09140.1 | Thale cress | cytosol | 56.61 | 62.31 |
| CDY22050 | Canola | nucleus | 64.75 | 61.81 |
| KRG96443 | Soybean | nucleus | 65.42 | 61.66 |
| CDX97264 | Canola | nucleus | 63.73 | 61.64 |
| Bra036267.1-P | Field mustard | nucleus | 65.08 | 61.54 |
| AT1G02840.1 | Thale cress | nucleus | 63.05 | 61.39 |
| CDY50385 | Canola | nucleus | 64.07 | 61.36 |
| Bra018550.1-P | Field mustard | nucleus | 53.9 | 60.92 |
| Solyc09g075090.1.1 | Tomato | nucleus | 61.69 | 59.67 |
| KRH68188 | Soybean | nucleus | 60.34 | 59.53 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 62.03 | 59.42 |
| AT4G02430.4 | Thale cress | nucleus | 57.97 | 58.56 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 57.29 | 57.88 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 62.71 | 55.06 |
| CDX95008 | Canola | nucleus | 53.22 | 49.53 |
| PGSC0003DMT400063701 | Potato | nucleus | 51.86 | 46.36 |
| Solyc06g009060.2.1 | Tomato | nucleus | 39.66 | 44.66 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 26.1 | 25.75 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 30.85 | 24.73 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G046940.7 | EnsemblPlantsGene:HORVU4Hr1G046940 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B46490E | UniProt:A0A287NYH8 | MapMan:16.4.6.1 | : | : |
Description
No Description!
Coordinates
chrchr4H:+:376109006..376114753
Molecular Weight (calculated)
32356.5 Da
IEP (calculated)
11.050
GRAVY (calculated)
-1.031
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRWSRTIY VGNLPGDIRE RAVEDLFYKY GRIVDIDLKV PPRPPGYAFV EFEDPRDAED ACAGRDGYNF DGNRLRVEPA HGGRGSGGPS HDRSGSFGGG
101: GGAGGGSGRR GVSRHTDYRV LVTGLPSSAS WQDLKVDHMR RAGDVCFSEV YREGGGTIGI ADYTNYDDMK YAIKKLDDTE FKNAFSKGYI RVKEYDGKRG
201: RSYSRSRSPS RSRSKSRSPS KSPRARSASR SRSRSLSSRS RSASKGRFPS RSPARSKSPI ASPANGVVTS SRASPKKHSP SRSPSRSRSP EVKSE
101: GGAGGGSGRR GVSRHTDYRV LVTGLPSSAS WQDLKVDHMR RAGDVCFSEV YREGGGTIGI ADYTNYDDMK YAIKKLDDTE FKNAFSKGYI RVKEYDGKRG
201: RSYSRSRSPS RSRSKSRSPS KSPRARSASR SRSRSLSSRS RSASKGRFPS RSPARSKSPI ASPANGVVTS SRASPKKHSP SRSPSRSRSP EVKSE
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.