Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G112200.1 | Wheat | nucleus | 97.2 | 97.89 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 97.2 | 97.89 |
| Os07t0673500-01 | Rice | nucleus | 88.81 | 85.81 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 97.9 | 80.92 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 81.47 | 78.98 |
| Bra018581.1-P | Field mustard | cytosol | 57.34 | 70.69 |
| CDY66028 | Canola | cytosol | 59.79 | 67.59 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 67.13 | 66.67 |
| Solyc01g099810.2.1 | Tomato | nucleus | 59.79 | 64.77 |
| CDX91319 | Canola | nucleus | 67.48 | 64.55 |
| KRG92904 | Soybean | nucleus | 61.19 | 63.41 |
| CDX97264 | Canola | nucleus | 67.48 | 63.28 |
| PGSC0003DMT400029666 | Potato | nucleus | 69.23 | 62.86 |
| CDY22050 | Canola | nucleus | 67.83 | 62.78 |
| AT1G09140.1 | Thale cress | cytosol | 58.74 | 62.69 |
| Bra036267.1-P | Field mustard | nucleus | 68.18 | 62.5 |
| Bra018550.1-P | Field mustard | nucleus | 56.99 | 62.45 |
| CDY50385 | Canola | nucleus | 67.13 | 62.34 |
| AT1G02840.1 | Thale cress | nucleus | 65.73 | 62.05 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 66.43 | 61.69 |
| KRG96443 | Soybean | nucleus | 66.43 | 60.7 |
| Solyc09g075090.1.1 | Tomato | nucleus | 63.99 | 60.0 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 60.84 | 59.59 |
| KRH68188 | Soybean | nucleus | 61.89 | 59.2 |
| AT4G02430.4 | Thale cress | nucleus | 60.14 | 58.9 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 67.13 | 57.14 |
| CDX95008 | Canola | nucleus | 55.59 | 50.16 |
| PGSC0003DMT400063701 | Potato | nucleus | 54.55 | 47.27 |
| Solyc06g009060.2.1 | Tomato | nucleus | 42.66 | 46.56 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 31.47 | 24.46 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 25.17 | 24.08 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | EMBL:AK353655 | EMBL:AK357171 | UniProt:F2CPV3 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:HORVU2Hr1G019410 | EnsemblPlants:HORVU2Hr1G019410.4 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000200446E | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CPV3]
Coordinates
chrchr2H:-:50528665..50533095
Molecular Weight (calculated)
31771.8 Da
IEP (calculated)
10.980
GRAVY (calculated)
-1.061
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GRIVEIDLKV PPRPPGFAFV EFEDPRDAED AIQGRDGYNF DGNRLRVELA HGGRANSSSL PNSHGGGGRR
101: GGVSRHTEYR VLVTGLPSSA SWQDLKDHMR KAGDVCFSEV YREGGGTIGI VDYTNYDDMK YAIRKLDDTE FKNAFSRAPI RVKEYAGKSS RSYSRSRSRS
201: RSGSYSRSPS KSPKKKTSRR SASRSRSRSV SSHSRSPSKG RSPSRSPAKS RSPVAASPVV NGEAASPKRD PSRSPSRSRS PDAKSE
101: GGVSRHTEYR VLVTGLPSSA SWQDLKDHMR KAGDVCFSEV YREGGGTIGI VDYTNYDDMK YAIRKLDDTE FKNAFSRAPI RVKEYAGKSS RSYSRSRSRS
201: RSGSYSRSPS KSPKKKTSRR SASRSRSRSV SSHSRSPSKG RSPSRSPAKS RSPVAASPVV NGEAASPKRD PSRSPSRSRS PDAKSE
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRQVFCPSFV FFLSTIMILL FVLLFLL
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRQVFCPSFV FFLSTIMILL FVLLFLL
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.