Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G112200.1 | Wheat | nucleus | 99.3 | 99.3 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 97.89 | 97.2 |
| Os07t0673500-01 | Rice | nucleus | 87.68 | 84.12 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 99.3 | 81.5 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 82.04 | 78.72 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 66.55 | 74.12 |
| Bra018581.1-P | Field mustard | cytosol | 57.39 | 70.26 |
| CDY66028 | Canola | cytosol | 59.86 | 67.19 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 59.15 | 66.4 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 66.9 | 65.97 |
| CDX91319 | Canola | nucleus | 67.61 | 64.21 |
| Solyc01g099810.2.1 | Tomato | nucleus | 59.51 | 64.02 |
| KRG92904 | Soybean | nucleus | 61.27 | 63.04 |
| CDX97264 | Canola | nucleus | 67.61 | 62.95 |
| CDY22050 | Canola | nucleus | 68.31 | 62.78 |
| Bra036267.1-P | Field mustard | nucleus | 68.66 | 62.5 |
| Bra018550.1-P | Field mustard | nucleus | 57.39 | 62.45 |
| CDY50385 | Canola | nucleus | 67.61 | 62.34 |
| AT1G02840.1 | Thale cress | nucleus | 66.2 | 62.05 |
| AT1G09140.1 | Thale cress | cytosol | 58.45 | 61.94 |
| PGSC0003DMT400029666 | Potato | nucleus | 68.66 | 61.9 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 66.55 | 61.36 |
| KRG96443 | Soybean | nucleus | 66.2 | 60.06 |
| Solyc09g075090.1.1 | Tomato | nucleus | 63.38 | 59.02 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 60.56 | 58.9 |
| KRH68188 | Soybean | nucleus | 61.97 | 58.86 |
| AT4G02430.4 | Thale cress | nucleus | 59.86 | 58.22 |
| CDX95008 | Canola | nucleus | 55.63 | 49.84 |
| PGSC0003DMT400063701 | Potato | nucleus | 54.93 | 47.27 |
| Solyc06g009060.2.1 | Tomato | nucleus | 41.9 | 45.42 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 31.69 | 26.32 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 29.58 | 25.23 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 23.59 | 24.1 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G111600.2 | EnsemblPlantsGene:TraesCS2A01G111600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF6 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:63133635..63137078
Molecular Weight (calculated)
31659.7 Da
IEP (calculated)
10.794
GRAVY (calculated)
-1.048
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GRIVEIDLKV PPRPPGFAFV EFEDPRDAED AIHGRDGYNF DGNRLRVELA HGGRANSSSL PNSYGGGGRR
101: GGVSRHTEYR VLVTGLPSSA SWQDLKDHMR KAGDVCFSEV YREGGGTIGI VDYTNYDDMK YAIRKLDDTE FKNAFSRAPI RVKEYAGKSS RSYSRSRSRS
201: RSGSYSRSPS PKKKPSRRSA SRSRSRSVSS HSRSPSKERS PSRSPAKSRS PVAASPVVNG EAVSPKRDPS KSPSRSRSPD AKSE
101: GGVSRHTEYR VLVTGLPSSA SWQDLKDHMR KAGDVCFSEV YREGGGTIGI VDYTNYDDMK YAIRKLDDTE FKNAFSRAPI RVKEYAGKSS RSYSRSRSRS
201: RSGSYSRSPS PKKKPSRRSA SRSRSRSVSS HSRSPSKERS PSRSPAKSRS PVAASPVVNG EAVSPKRDPS KSPSRSRSPD AKSE
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRYGFT YD
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRYGFT YD
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.