Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G169700.5 | Wheat | nucleus | 83.09 | 82.18 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 69.49 | 79.41 |
| Os07t0623300-01 | Rice | nucleus | 66.18 | 65.45 |
| VIT_18s0001g05550.t01 | Wine grape | nucleus | 58.46 | 61.87 |
| KRH42160 | Soybean | nucleus | 58.82 | 59.93 |
| KRH58277 | Soybean | nucleus | 58.82 | 59.93 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 55.88 | 59.61 |
| GSMUA_Achr10P... | Banana | nucleus | 51.84 | 59.49 |
| Solyc01g105140.2.1 | Tomato | nucleus | 55.51 | 59.45 |
| PGSC0003DMT400045694 | Potato | nucleus | 55.88 | 58.91 |
| Solyc04g074040.2.1 | Tomato | nucleus | 55.88 | 58.91 |
| PGSC0003DMT400032709 | Potato | nucleus | 54.41 | 58.27 |
| HORVU2Hr1G029630.1 | Barley | plastid | 27.94 | 55.88 |
| Bra024276.1-P | Field mustard | nucleus | 54.04 | 52.5 |
| KXG39239 | Sorghum | nucleus | 45.22 | 52.12 |
| AT5G64200.2 | Thale cress | nucleus | 53.68 | 48.18 |
| CDX84503 | Canola | nucleus | 40.81 | 40.96 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 23.16 | 30.43 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 26.84 | 27.14 |
| CDY43799 | Canola | vacuole | 29.41 | 24.77 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 37.87 | 23.84 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 25.74 | 23.65 |
| TraesCS4B01G156200.1 | Wheat | nucleus | 19.49 | 22.18 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 18.01 | 6.17 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G188600.1 | EnsemblPlantsGene:TraesCS2B01G188600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF42 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:164088726..164091514
Molecular Weight (calculated)
31324.5 Da
IEP (calculated)
11.726
GRAVY (calculated)
-1.456
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRFGRSGPP PIRDTYSLLV LNITFRKFPL RISTALFPSP RGTPPLGGRP NPPRACLAGT TADDLFPLFD KYGEVVDIYI PRDRRTGDSR GFAFVRYKYE
101: DEAQKAVDRL DGRLVDGREM MVQFAKYGPN AERMYRDDHR GRDSRRRSRS RSGDRYGRDR YRERDHHRRS RSLSASPDDY KRRGRDRSPS RSRSRSYSPD
201: DDRKGGRDSL SPARRSTSRS PRKTPPPRKT PPPREGSPAR RNDDRSPVGR NDDRSPVRRN DDRSPGSRSP ST
101: DEAQKAVDRL DGRLVDGREM MVQFAKYGPN AERMYRDDHR GRDSRRRSRS RSGDRYGRDR YRERDHHRRS RSLSASPDDY KRRGRDRSPS RSRSRSYSPD
201: DDRKGGRDSL SPARRSTSRS PRKTPPPRKT PPPREGSPAR RNDDRSPVGR NDDRSPVRRN DDRSPGSRSP ST
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.