Factsheet for VIT_18s0001g05550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074040.2.1	Tomato	nucleus	80.16	79.84
PGSC0003DMT400045694	Potato	nucleus	80.16	79.84
HORVU2Hr1G029640.1	Barley	mitochondrion	42.8	79.14
GSMUA_Achr10P...	Banana	nucleus	69.65	75.53
VIT_12s0142g00110.t01	Wine grape	nucleus	73.93	74.51
KXG36736	Sorghum	nucleus	67.32	69.2
Zm00001d006906_P010	Maize	mitochondrion	66.54	67.86
Zm00001d022189_P002	Maize	nucleus	63.81	64.57
TraesCS2D01G169700.5	Wheat	nucleus	68.48	64.0
Os07t0623300-01	Rice	nucleus	66.93	62.55
KXG39239	Sorghum	nucleus	55.64	60.59
TraesCS2B01G188600.1	Wheat	nucleus, plastid	61.87	58.46
TraesCS2A01G162700.3	Wheat	nucleus	53.31	57.56
HORVU2Hr1G029630.1	Barley	plastid	27.63	52.21
CDX84503	Canola	nucleus	51.75	49.08
VIT_06s0004g00710.t01	Wine grape	nucleus	31.13	32.65
CDY43799	Canola	vacuole	37.35	29.72
VIT_14s0030g00480.t01	Wine grape	nucleus	30.35	27.18
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	40.08	23.84
VIT_13s0019g01060.t01	Wine grape	nucleus	31.52	22.95

Protein Annotations

EntrezGene:100243776	wikigene:100243776	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI19154	ProteinID:CBI19154.3
UniProt:E0CRK0	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100243776	wikigene:LOC100243776	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	TIGR:TC56633	UniParc:UPI00015C8072	ArrayExpress:VIT_18s0001g05550
EnsemblPlantsGene:VIT_18s0001g05550	EnsemblPlants:VIT_18s0001g05550.t01	unigene:Vvi.13858	unigene:Vvi.6695	RefSeq:XP_002285794	RefSeq:XP_002285794.1
RefSeq:XP_010664318.1	RefSeq:XP_010664320.1	RefSeq:XP_010664321.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:4349906..4352613

Molecular Weight (calculated)

29817.5 Da

IEP (calculated)

11.774

GRAVY (calculated)

-1.621

Length

257 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIRDTYSLLV LNITFRTTAD DLFPLFDKYG KVVDVFIPRD RRTGDSRGFA FVRYKYADEA QKAVEKLDGR NVDGREIMVQ FAKYGPNAER
101: IHKGRIIETS SKSKGRSRSR SPRPRHRDEY RDRDYRKRSR SRSRGRNDRD RYRGKERDSR RRSRSRSASP DHHKDRGRGR YDDERRSRSR SYGSASPARR
201: SPSPRGSPSP RRTPPSREES PVGRKRNERS PTPKSVSPRG RPADSRSPSP HNSDADE

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.