Factsheet for VIT_13s0019g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04770.t01
VIT_01s0026g00250.t01
VIT_04s0008g04220.t01
VIT_05s0102g00080.t01
VIT_07s0005g00320.t01
VIT_08s0040g02860.t01
VIT_12s0142g00110.t01
VIT_13s0019g01060.t01
VIT_13s0019g05080.t01
VIT_14s0030g00480.t01
VIT_14s0060g02290.t01
VIT_15s0046g00060.t01
VIT_18s0122g00480.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55460.1	VIT_07s0005g00320.t01	AT1G02840.1	18674533
AT3G55460.1	VIT_14s0060g02290.t01	AT1G09140.1	18674533
AT3G55460.1	VIT_01s0026g00250.t01	AT1G23860.1	18674533
AT3G55460.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT3G55460.1	VIT_01s0011g04770.t01	AT1G71020.1	21798944
AT3G55460.1	VIT_08s0040g02860.t01	AT2G37340.1	18674533
AT3G55460.1	VIT_05s0102g00080.t01	AT2G43370.1	15987817
AT3G55460.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT3G55460.1	VIT_13s0019g01060.t01	AT3G55460.1	18674533
AT3G55460.1	VIT_13s0019g01060.t01	AT3G55460.1	21798944
AT3G55460.1	VIT_15s0046g00060.t01	AT3G61860.1	18674533
AT3G55460.1	VIT_04s0008g04220.t01	AT4G32660.1	21798944
AT3G55460.1	VIT_13s0019g05080.t01	AT5G04280.1	21798944
AT3G55460.1	VIT_14s0030g00480.t01	AT5G18810.1	18674533
AT3G55460.1	VIT_18s0122g00480.t01	AT5G42820.1	21798944
AT3G55460.1	VIT_12s0142g00110.t01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G061320.1	Barley	mitochondrion	30.31	75.89
KRH15102	Soybean	nucleus	55.24	71.96
KRH73034	Soybean	nucleus	55.24	70.65
Os12t0572400-01	Rice	nucleus	51.56	69.2
Os02t0252100-02	Rice	nucleus	51.84	69.06
GSMUA_Achr8P34280_001	Banana	nucleus	51.84	68.03
EES16196	Sorghum	nucleus	50.14	67.56
CDY02941	Canola	nucleus	51.56	65.47
GSMUA_Achr1P17340_001	Banana	nucleus	49.58	65.3
CDX76092	Canola	plastid	51.84	64.89
AT3G55460.1	Thale cress	mitochondrion, nucleus	47.59	64.12
HORVU2Hr1G073490.2	Barley	cytosol, nucleus	30.31	64.07
HORVU7Hr1G118660.4	Barley	nucleus	40.79	63.44
EES10309	Sorghum	nucleus	48.16	62.96
TraesCS4A01G289300.1	Wheat	nucleus	47.03	62.41
HORVU4Hr1G003820.8	Barley	nucleus	47.03	62.41
TraesCS4B01G025600.1	Wheat	nucleus	47.31	62.08
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	51.84	62.03
TraesCS4D01G022700.1	Wheat	nucleus	47.59	61.76
HORVU4Hr1G058060.2	Barley	mitochondrion, nucleus	40.23	61.74
TraesCS5D01G093200.1	Wheat	nucleus, plastid	50.42	60.14
TraesCS5B01G087000.2	Wheat	nucleus, plastid	50.42	60.14
TraesCS5A01G079000.1	Wheat	nucleus	50.14	59.8
HORVU5Hr1G021180.4	Barley	nucleus, plastid	50.14	58.8
Zm00001d048609_P001	Maize	nucleus, plastid	47.59	58.33
HORVU6Hr1G034010.3	Barley	nucleus	42.21	56.87
Zm00001d030739_P002	Maize	mitochondrion, nucleus, plastid	51.27	49.05
VIT_06s0004g00710.t01	Wine grape	nucleus	33.43	48.16
VIT_14s0030g00480.t01	Wine grape	nucleus	33.71	41.46
VIT_18s0001g05550.t01	Wine grape	nucleus	22.95	31.52
VIT_12s0142g00110.t01	Wine grape	nucleus	22.38	30.98
Os11t0704700-01	Rice	nucleus	37.11	25.64
TraesCS4A01G176000.13	Wheat	nucleus	41.08	15.93
TraesCS4D01G136700.4	Wheat	nucleus	40.23	15.66
HORVU4Hr1G027820.11	Barley	nucleus, plastid	41.08	13.25
TraesCS4B01G141700.1	Wheat	nucleus	29.46	13.1

Protein Annotations

EntrezGene:100258210	wikigene:100258210	MapMan:16.4.6.2	Gene3D:3.30.70.330	ProteinID:CBI31687	ProteinID:CBI31687.3
UniProt:D7TLV0	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100258210	wikigene:LOC100258210	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC57471	UniParc:UPI0001BE3E89	ArrayExpress:VIT_13s0019g01060	EnsemblPlantsGene:VIT_13s0019g01060	EnsemblPlants:VIT_13s0019g01060.t01
unigene:Vvi.2916	RefSeq:XP_002283722	RefSeq:XP_002283722.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:2759279..2766414

Molecular Weight (calculated)

40988.3 Da

IEP (calculated)

11.198

GRAVY (calculated)

-1.054

Length

353 amino acids

Sequence
(BLAST)

001: MSILTWYKTL LDPTESGWFE LAYKLPRLQF DSLDLRVIVG RFFLEVVDSV GKNFGFHRIG FPKGKILQIF QKNFKSIMRR YSPPYYSAPR RGYGGRERSP
101: PRRGYGGYGR RKEQNHGSLL VRNIPLNCRP EDLRVPFERF GLVRDVYLPK DYYTGEPRGF AFVQFVDPYE ASEAQYHMNG QIFAGREISV VVAAETRKRP
201: EEMRTRARVR GPSSYGGRRS SYYGGSRSRS VSRSRSPPRL LSGSRRYRSR SYSPVPRRRG DYSVSPRRRV EHPRSPRDHP PERDGDHIRR SYSPGYDDAA
301: DQNHHTGNGY LEKSAYEPDE ARDRRRSPPP RRVSRSLSGS RSRSADVSPR HSR

Best Arabidopsis Sequence Match ( AT3G55460.1 )
(BLAST)

001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR

Arabidopsis Description

SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.