Factsheet for VIT_14s0030g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00250.t01
VIT_05s0102g00080.t01
VIT_07s0005g00320.t01
VIT_08s0040g02860.t01
VIT_12s0142g00110.t01
VIT_13s0019g01060.t01
VIT_14s0030g00480.t01
VIT_14s0060g02290.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18810.1	VIT_07s0005g00320.t01	AT1G02840.1	18674533
AT5G18810.1	VIT_14s0060g02290.t01	AT1G09140.1	18674533
AT5G18810.1	VIT_01s0026g00250.t01	AT1G23860.1	18674533
AT5G18810.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT5G18810.1	VIT_08s0040g02860.t01	AT2G37340.1	18674533
AT5G18810.1	VIT_05s0102g00080.t01	AT2G43370.1	15987817
AT5G18810.1	VIT_13s0019g01060.t01	AT3G55460.1	18674533
AT5G18810.1	VIT_14s0030g00480.t01	AT5G18810.1	18674533
AT5G18810.1	VIT_12s0142g00110.t01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02172	Soybean	nucleus	64.81	74.4
KRH50944	Soybean	nucleus	61.32	72.43
Solyc01g080660.2.1	Tomato	nucleus	41.81	72.29
GSMUA_Achr5P27470_001	Banana	nucleus	28.92	69.17
GSMUA_Achr8P00210_001	Banana	mitochondrion, nucleus	25.44	68.22
GSMUA_Achr5P27460_001	Banana	nucleus	21.95	67.02
AT5G18810.1	Thale cress	nucleus	54.01	65.68
PGSC0003DMT400016115	Potato	nucleus	57.84	62.41
Os03t0363800-01	Rice	nucleus	49.83	58.85
TraesCS4B01G156200.1	Wheat	nucleus	48.78	58.58
TraesCS4D01G162900.1	Wheat	nucleus	48.43	58.4
KXG39307	Sorghum	nucleus	48.78	58.09
HORVU4Hr1G045510.3	Barley	nucleus	48.08	57.74
TraesCS4A01G141800.2	Wheat	nucleus	49.13	56.4
Zm00001d029256_P002	Maize	nucleus	44.6	52.24
VIT_06s0004g00710.t01	Wine grape	nucleus	39.02	45.71
HORVU7Hr1G080760.3	Barley	mitochondrion	24.04	41.07
HORVU1Hr1G043200.4	Barley	mitochondrion, nucleus	23.34	36.02
VIT_13s0019g01060.t01	Wine grape	nucleus	41.46	33.71
VIT_12s0142g00110.t01	Wine grape	nucleus	27.18	30.59
VIT_18s0001g05550.t01	Wine grape	nucleus	27.18	30.35
GSMUA_Achr8P00220_001	Banana	extracellular	23.0	29.86

Protein Annotations

EntrezGene:100262434	wikigene:100262434	MapMan:16.4.6.2	Gene3D:3.30.70.330	ProteinID:CBI34317	ProteinID:CBI34317.3
UniProt:D7TUZ2	EMBL:FN596249	GO:GO:0000003	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0007283	GO:GO:0008150	GO:GO:0016607	InterPro:IPR000504
InterPro:IPR012677	EntrezGene:LOC100262434	wikigene:LOC100262434	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	ScanProsite:PS00048
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF7	InterPro:Protamine_P1	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001984953	ArrayExpress:VIT_14s0030g00480	EnsemblPlantsGene:VIT_14s0030g00480	EnsemblPlants:VIT_14s0030g00480.t01
unigene:Vvi.19424	RefSeq:XP_002265951	RefSeq:XP_002265951.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:4335963..4354395

Molecular Weight (calculated)

33725.0 Da

IEP (calculated)

12.196

GRAVY (calculated)

-1.761

Length

287 amino acids

Sequence
(BLAST)

001: MARYRSRSRS YSPRRSRTPP RRRRFDDRSR PSRSYRDRRS PAPSGLLVRN IALDARPEDL RVPFERFGPV KDVYLPKNYY TGEPRGFGFV KFRNAEDAAE
101: AKHHLNHSVI GGREIAIVFA EENRKTPQEM RTNSRVSGRH GGSYRRRSPP RSPRRRYRSY SRSPSPVRHD SRDRDRGGRD YYSPSRSRSV SRSVSPRDDK
201: HYRSNHNSKS PRQNDQSPRS NRDRGSDKRS FSPMKNGQSP RSPSPRENDR RKHGKKNQGS DRRSPSPRRY ERSLSRSPSR SRSYSPR

Best Arabidopsis Sequence Match ( AT5G18810.2 )
(BLAST)

001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR

Arabidopsis Description

SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.