Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 4
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P27460_001 | Banana | nucleus | 71.03 | 80.85 |
| Solyc01g080660.2.1 | Tomato | nucleus | 53.27 | 34.34 |
| KRH50944 | Soybean | nucleus | 69.16 | 30.45 |
| KRH02172 | Soybean | nucleus | 68.22 | 29.2 |
| AT5G18810.1 | Thale cress | nucleus | 58.88 | 26.69 |
| HORVU7Hr1G080760.3 | Barley | mitochondrion | 40.19 | 25.6 |
| VIT_14s0030g00480.t01 | Wine grape | nucleus | 68.22 | 25.44 |
| PGSC0003DMT400016115 | Potato | nucleus | 53.27 | 21.43 |
| HORVU1Hr1G043200.4 | Barley | mitochondrion, nucleus | 36.45 | 20.97 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 40.19 | 19.82 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 42.99 | 17.16 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 39.25 | 17.14 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 40.19 | 15.99 |
| GSMUA_Achr10P... | Banana | nucleus | 22.43 | 10.13 |
| GSMUA_Achr5P05380_001 | Banana | nucleus | 22.43 | 9.41 |
| GSMUA_Achr2P00600_001 | Banana | nucleus | 21.5 | 9.31 |
| GSMUA_Achr8P00220_001 | Banana | extracellular | 12.15 | 5.88 |
| GSMUA_Achr5P27470_001 | Banana | nucleus | 2.8 | 2.5 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | GO:GO:0000003 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007283 | GO:GO:0008150 | EnsemblPlantsGene:GSMUA_Achr8G00210_001 | EnsemblPlants:GSMUA_Achr8P00210_001 | EnsemblPlants:GSMUA_Achr8T00210_001 | InterPro:IPR012677 |
| UniProt:M0TLC3 | InterPro:Nucleotide-bd_a/b_plait_sf | ScanProsite:PS00048 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF7 | InterPro:Protamine_P1 |
| InterPro:RBD_domain_sf | SUPFAM:SSF54928 | TMHMM:TMhelix | UniParc:UPI000294F104 | SEG:seg | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G00210_001]
Coordinates
chr8:+:171943..174147
Molecular Weight (calculated)
12613.2 Da
IEP (calculated)
11.211
GRAVY (calculated)
-0.868
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MARYRSRSRS FSPRRDSRSP PRRKYYDDLR DRRGGGGRDY RDRRSSAPSG LLIRNIALDA RPEDLRIPFE RFGPVKDVYL PKNYYTGYIL LLPVTKLFFP
101: TLIIGKD
101: TLIIGKD
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.