Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P05380_001 | Banana | nucleus | 87.04 | 84.31 |
| GSMUA_Achr10P... | Banana | nucleus | 70.04 | 73.0 |
| Os03t0388000-01 | Rice | mitochondrion, nucleus | 51.82 | 62.44 |
| KXG25727 | Sorghum | nucleus | 67.61 | 61.17 |
| Os08t0486200-02 | Rice | nucleus | 69.64 | 59.52 |
| Zm00001d052803_P004 | Maize | nucleus | 65.59 | 53.82 |
| Zm00001d031269_P002 | Maize | nucleus | 66.8 | 47.97 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 27.13 | 30.88 |
| GSMUA_Achr5P27470_001 | Banana | nucleus | 14.17 | 29.17 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 27.53 | 27.76 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 29.96 | 27.51 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 28.34 | 26.12 |
| GSMUA_Achr5P27460_001 | Banana | nucleus | 8.5 | 22.34 |
| GSMUA_Achr8P00210_001 | Banana | mitochondrion, nucleus | 9.31 | 21.5 |
| GSMUA_Achr8P00220_001 | Banana | extracellular | 13.77 | 15.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P00600_001 | EnsemblPlants:GSMUA_Achr2T00600_001 | EnsemblPlantsGene:GSMUA_Achr2G00600_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000294A8BF | UniProt:M0S401 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G00600_001]
Coordinates
chr2:+:3898106..3904856
Molecular Weight (calculated)
28580.1 Da
IEP (calculated)
11.726
GRAVY (calculated)
-1.432
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHFGRSGPP DIKDTYSLLV LNISFRTTAD DLFPLFDRYG KVVDVFIPRD RRSGESRGFA FVRYKYADEA QKAVERLDGK NVDGRNIMVQ FAKYGPNAER
101: IHKGRIVEAI PKTRGRSRSR SPRPRYRDSN RERDYRRRSR SRSRGRYESD RYNDRERDYR RRSRSASPDY SRGRGRDDRR SRSVSYDSAS PARRSPSPER
201: SLTPRRTPPS SPEKGSHGER SPPSKSASPL ARRTGSRSPS SRSLNED
101: IHKGRIVEAI PKTRGRSRSR SPRPRYRDSN RERDYRRRSR SRSRGRYESD RYNDRERDYR RRSRSASPDY SRGRGRDDRR SRSVSYDSAS PARRSPSPER
201: SLTPRRTPPS SPEKGSHGER SPPSKSASPL ARRTGSRSPS SRSLNED
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.