Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P00600_001 | Banana | nucleus | 84.31 | 87.04 |
| GSMUA_Achr10P... | Banana | nucleus | 67.06 | 72.15 |
| Os03t0388000-01 | Rice | mitochondrion, nucleus | 50.2 | 62.44 |
| Os08t0486200-02 | Rice | nucleus | 69.41 | 61.25 |
| KXG25727 | Sorghum | nucleus | 65.1 | 60.81 |
| Zm00001d052803_P004 | Maize | nucleus | 63.53 | 53.82 |
| Zm00001d031269_P002 | Maize | nucleus | 63.92 | 47.38 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 25.88 | 30.41 |
| GSMUA_Achr5P27470_001 | Banana | nucleus | 13.73 | 29.17 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 26.67 | 27.76 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 28.63 | 27.14 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 27.06 | 25.75 |
| GSMUA_Achr5P27460_001 | Banana | nucleus | 8.63 | 23.4 |
| GSMUA_Achr8P00210_001 | Banana | mitochondrion, nucleus | 9.41 | 22.43 |
| GSMUA_Achr8P00220_001 | Banana | extracellular | 13.73 | 15.84 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P05380_001 | EnsemblPlants:GSMUA_Achr5T05380_001 | EnsemblPlantsGene:GSMUA_Achr5G05380_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295F58B | UniProt:M0SVW7 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G05380_001]
Coordinates
chr5:-:3979871..3988423
Molecular Weight (calculated)
29655.3 Da
IEP (calculated)
11.551
GRAVY (calculated)
-1.440
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHFGRSGPP DIKDTYSLLV LNISFRTTAD DLFPLFDRYG KVVDVFIPRD RRTGESRGFA FVRYKYADEA QKAVDRLDGK NVDGRNIMVQ FAKYGPNAER
101: IQKGRIVEAI PKTRGRSRSR SPRHRYRDDY REKDYRRRSH SRSRGRYESD RYHERERDHR RRSRSQSRSR SRSGSLDYYG GRGRDDRRSR SVSYDSASPI
201: RHIPSPERSL TPHRTPPSSP NKGSHSVRSP PSRNVSPQDR GANSRSPSPR SPNED
101: IQKGRIVEAI PKTRGRSRSR SPRHRYRDDY REKDYRRRSH SRSRGRYESD RYHERERDHR RRSRSQSRSR SRSGSLDYYG GRGRDDRRSR SVSYDSASPI
201: RHIPSPERSL TPHRTPPSSP NKGSHSVRSP PSRNVSPQDR GANSRSPSPR SPNED
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.