Factsheet for Zm00001d031269_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25727	Sorghum	nucleus	68.6	86.45
Zm00001d052803_P004	Maize	nucleus	65.12	74.42
Os08t0486200-02	Rice	nucleus	62.21	74.05
GSMUA_Achr2P00600_001	Banana	nucleus	47.97	66.8
GSMUA_Achr5P05380_001	Banana	nucleus	47.38	63.92
Zm00001d006906_P010	Maize	mitochondrion	43.31	59.13
Zm00001d022189_P002	Maize	nucleus	41.28	55.91
Zm00001d029629_P001	Maize	nucleus	4.07	31.11
Zm00001d029305_P001	Maize	nucleus	14.83	31.1
Zm00001d022243_P002	Maize	nucleus	18.02	29.67
Zm00001d047401_P001	Maize	nucleus	17.73	28.24
Zm00001d005285_P001	Maize	nucleus	11.63	27.97
Zm00001d019443_P002	Maize	nucleus	8.43	27.36
Zm00001d012570_P002	Maize	extracellular	12.79	26.99
Zm00001d004470_P001	Maize	nucleus	8.43	26.13
Zm00001d004722_P001	Maize	cytosol	7.56	24.53
Zm00001d048609_P001	Maize	nucleus, plastid	20.06	23.96
Zm00001d029380_P002	Maize	cytosol, nucleus, plasma membrane	28.49	22.69
Zm00001d016504_P001	Maize	nucleus	4.94	22.67
Zm00001d029256_P002	Maize	nucleus	15.7	22.04
Zm00001d010176_P001	Maize	cytosol	7.27	21.93
Zm00001d010881_P001	Maize	nucleus	11.05	20.77
Zm00001d030739_P002	Maize	mitochondrion, nucleus, plastid	20.64	19.24
Zm00001d015189_P001	Maize	nucleus	9.3	18.18
Zm00001d005739_P004	Maize	cytosol	5.81	18.18
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	10.76	17.13
Zm00001d043759_P001	Maize	cytosol	7.27	16.23

Protein Annotations

EntrezGene:100191156	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6KHX5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM02596.1
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008423904	EnsemblPlantsGene:Zm00001d031269	EnsemblPlants:Zm00001d031269_P002	EnsemblPlants:Zm00001d031269_T002
SEG:seg	:	:	:	:	:

Description

Serine/arginine-rich splicing factor SC35

Coordinates

chr1:-:184545305..184548977

Molecular Weight (calculated)

39481.7 Da

IEP (calculated)

11.817

GRAVY (calculated)

-1.119

Length

344 amino acids

Sequence
(BLAST)

001: MSHFGRTGPP DIRDTFSLLV LNISFRTTAD DLFPLFERCG KVVDVFIPRD RRTGDSRGFA FVRYKYADEA QKAIDRLDGD FLGAGRNVDG RNIMVQFAKY
101: GPNAVPIHKG RVKEGVEKSR DRSRSRSPRP RHRDRDDRRR SRSRSRSRER HVHDRDRDYR RRSRSRSRSM SSSPDHKSHR RARDDVKRKS RSKSRSRSRS
201: RSRSYHSSSP ARRSASPPKS PPPQRSPTPE KHANGKDSPL SRSVSPSPKR ASSRSPGSDS KLSVRERGCC LPVECDHLDA VYIFVQEVLN QIMKFQMDLM
301: IVLVGTRCRL AEMLRGVCTH SNNGTRRRRN MANNLYGNGG ISYD

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.