Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019443_P002 | Maize | nucleus | 33.54 | 51.89 |
| Zm00001d029629_P001 | Maize | nucleus | 14.02 | 51.11 |
| Zm00001d005285_P001 | Maize | nucleus | 44.51 | 51.05 |
| Zm00001d004470_P001 | Maize | nucleus | 31.1 | 45.95 |
| Zm00001d016504_P001 | Maize | nucleus | 20.73 | 45.33 |
| EER92211 | Sorghum | nucleus | 57.32 | 44.13 |
| Zm00001d047401_P001 | Maize | nucleus | 56.71 | 43.06 |
| Zm00001d022243_P002 | Maize | nucleus | 52.44 | 41.15 |
| Os03t0374575-01 | Rice | nucleus | 54.27 | 41.01 |
| Zm00001d010881_P001 | Maize | nucleus | 45.12 | 40.44 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 48.78 | 36.87 |
| KRH16958 | Soybean | nucleus | 54.27 | 35.74 |
| Bra034794.1-P | Field mustard | nucleus | 44.51 | 35.27 |
| CDY08473 | Canola | nucleus | 43.9 | 35.12 |
| Zm00001d012570_P002 | Maize | extracellular | 34.76 | 34.97 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 51.83 | 34.69 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 51.22 | 34.29 |
| KRH72576 | Soybean | nucleus | 52.44 | 33.99 |
| Zm00001d015189_P001 | Maize | nucleus | 35.98 | 33.52 |
| PGSC0003DMT400081835 | Potato | nucleus | 48.78 | 32.26 |
| Solyc01g005820.2.1 | Tomato | nucleus | 48.78 | 31.75 |
| AT3G13570.1 | Thale cress | nucleus | 50.61 | 31.68 |
| CDY01078 | Canola | nucleus | 44.51 | 30.67 |
| PGSC0003DMT400010908 | Potato | nucleus | 49.39 | 28.93 |
| AT1G55310.3 | Thale cress | nucleus | 51.22 | 28.09 |
| Zm00001d005739_P004 | Maize | cytosol | 18.29 | 27.27 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 46.34 | 26.39 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 40.85 | 23.43 |
| Zm00001d043759_P001 | Maize | cytosol | 21.95 | 23.38 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 30.49 | 23.15 |
| Zm00001d029256_P002 | Maize | nucleus | 32.93 | 22.04 |
| Zm00001d010176_P001 | Maize | cytosol | 14.63 | 21.05 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 46.95 | 20.87 |
| Zm00001d006906_P010 | Maize | mitochondrion | 31.71 | 20.63 |
| Zm00001d022189_P002 | Maize | nucleus | 29.88 | 19.29 |
| Zm00001d004722_P001 | Maize | cytosol | 12.2 | 18.87 |
| Zm00001d052803_P004 | Maize | nucleus | 31.71 | 17.28 |
| Zm00001d031269_P002 | Maize | nucleus | 31.1 | 14.83 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 24.39 | 9.26 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6K470 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONL98421.1 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF11 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0008456FA4 | EnsemblPlantsGene:Zm00001d029305 | EnsemblPlants:Zm00001d029305_P001 | EnsemblPlants:Zm00001d029305_T001 | SEG:seg |
Description
Serine/arginine-rich SC35-like splicing factor SCL33
Coordinates
chr1:-:65548177..65549507
Molecular Weight (calculated)
18460.5 Da
IEP (calculated)
11.229
GRAVY (calculated)
-1.067
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MHCALSYHLR EPFGRFGRVK DIYLPKDYYT QQFRGFGFVE YVDLEDASNA KHYMDGQIVL GRKLRVVYAQ DVRKSPSAMR LRAIERSGGG PSCVRRSRSR
101: SPGYHDSPRG RSRSRSRSYS AAQHYSRSSS PRPRERSSPA DSGSKSASPG ASRSPPRQRS PSDG
101: SPGYHDSPRG RSRSRSRSYS AAQHYSRSSS PRPRERSSPA DSGSKSASPG ASRSPPRQRS PSDG
001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
Arabidopsis Description
SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.