Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- vacuole 1
- golgi 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041673_P001 | Maize | cytosol | 25.47 | 71.05 |
| Zm00001d040672_P013 | Maize | nucleus | 32.7 | 35.49 |
| Bra018581.1-P | Field mustard | cytosol | 25.47 | 34.91 |
| CDY66028 | Canola | cytosol | 26.1 | 32.81 |
| Solyc01g099810.2.1 | Tomato | nucleus | 26.42 | 31.82 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 28.62 | 31.6 |
| KRG92904 | Soybean | nucleus | 27.36 | 31.52 |
| AT1G09140.1 | Thale cress | cytosol | 25.47 | 30.22 |
| Bra018550.1-P | Field mustard | nucleus | 24.53 | 29.89 |
| Zm00001d047498_P003 | Maize | nucleus | 26.73 | 29.82 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 27.04 | 27.92 |
| Solyc09g075090.1.1 | Tomato | nucleus | 26.73 | 27.87 |
| KRH68188 | Soybean | nucleus | 26.1 | 27.76 |
| CDX91319 | Canola | nucleus | 26.1 | 27.76 |
| AT4G02430.4 | Thale cress | nucleus | 25.47 | 27.74 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 29.56 | 27.17 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 24.84 | 27.05 |
| PGSC0003DMT400029666 | Potato | nucleus | 26.73 | 26.98 |
| CDX97264 | Canola | nucleus | 25.79 | 26.89 |
| KRG96443 | Soybean | nucleus | 26.1 | 26.52 |
| CDX95008 | Canola | nucleus | 26.42 | 26.5 |
| CDY22050 | Canola | nucleus | 25.47 | 26.21 |
| AT1G02840.1 | Thale cress | nucleus | 24.84 | 26.07 |
| CDY50385 | Canola | nucleus | 25.16 | 25.97 |
| Bra036267.1-P | Field mustard | nucleus | 25.47 | 25.96 |
| PGSC0003DMT400063701 | Potato | nucleus | 25.79 | 24.85 |
| Zm00001d037543_P001 | Maize | nucleus | 8.81 | 15.56 |
| Zm00001d011004_P008 | Maize | nucleus | 16.04 | 15.09 |
| Zm00001d011005_P005 | Maize | nucleus | 15.41 | 13.88 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 14.78 | 12.67 |
| Solyc06g009060.2.1 | Tomato | nucleus | 9.43 | 11.45 |
| Zm00001d035551_P007 | Maize | nucleus | 12.58 | 10.2 |
Protein Annotations
| EnsemblPlants:Zm00001d009821_P001 | EnsemblPlants:Zm00001d009821_T001 | EnsemblPlantsGene:Zm00001d009821 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF1 | PFAM:PF00076 | ProteinID:AQK92768.1 | SEG:seg | SUPFAM:SSF54928 |
| UniParc:UPI0008441DC3 | UniProt:A0A1D6FM76 | MapMan:35.1 | : | : | : |
Description
Serine/arginine-rich-splicing factor SR34
Coordinates
chr8:+:83734688..83741390
Molecular Weight (calculated)
35223.9 Da
IEP (calculated)
5.611
GRAVY (calculated)
-0.132
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVALLLSP RSVSFPPHPS LAPGFTKRPP PYLLGGHGAG ARFRAVEDGP GAGLPPEQAT IYDGAYGPWT LEDSDVCEVV FGKNGGLEQI GSRKGYVDMS
101: TVDATTLTKI SEYGRILDID LKIPPRPPRY AVVEFEDPHD ADDAIYGRDE YNFDGYRLLV CISCFHLMVL LEERIDLCFL AFAENAFSTH VELAHSGRGQ
201: SYSYDRSSSY ISACRGGVSR RSDFHGWTCW KELITTFQDH MRRAGDVCFS DVYREVGEWM WASKSYVPRL STNRGGGGWT PRSIMLDLIN LAVKSQAKSI
301: DVAAVDLPFQ LCLMFLVL
101: TVDATTLTKI SEYGRILDID LKIPPRPPRY AVVEFEDPHD ADDAIYGRDE YNFDGYRLLV CISCFHLMVL LEERIDLCFL AFAENAFSTH VELAHSGRGQ
201: SYSYDRSSSY ISACRGGVSR RSDFHGWTCW KELITTFQDH MRRAGDVCFS DVYREVGEWM WASKSYVPRL STNRGGGGWT PRSIMLDLIN LAVKSQAKSI
301: DVAAVDLPFQ LCLMFLVL
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.