Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004722_P001 | Maize | cytosol | 61.4 | 66.04 |
| Zm00001d016504_P001 | Maize | nucleus | 26.32 | 40.0 |
| Zm00001d019443_P002 | Maize | nucleus | 30.7 | 33.02 |
| Zm00001d029629_P001 | Maize | nucleus | 10.53 | 26.67 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 49.12 | 25.93 |
| Zm00001d005285_P001 | Maize | nucleus | 30.7 | 24.48 |
| Zm00001d004470_P001 | Maize | nucleus | 21.05 | 21.62 |
| Zm00001d005739_P004 | Maize | cytosol | 19.3 | 20.0 |
| Zm00001d015189_P001 | Maize | nucleus | 30.7 | 19.89 |
| Zm00001d010881_P001 | Maize | nucleus | 31.58 | 19.67 |
| Zm00001d047401_P001 | Maize | nucleus | 33.33 | 17.59 |
| Bra034794.1-P | Field mustard | nucleus | 30.7 | 16.91 |
| EER92211 | Sorghum | nucleus | 31.58 | 16.9 |
| Os03t0374575-01 | Rice | nucleus | 31.58 | 16.59 |
| CDY08473 | Canola | nucleus | 29.82 | 16.59 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 34.21 | 15.92 |
| Zm00001d043759_P001 | Maize | cytosol | 21.05 | 15.58 |
| KRH16958 | Soybean | nucleus | 32.46 | 14.86 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 28.07 | 14.75 |
| CDY01078 | Canola | nucleus | 30.7 | 14.71 |
| Zm00001d029305_P001 | Maize | nucleus | 21.05 | 14.63 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 30.7 | 14.29 |
| KRH72576 | Soybean | nucleus | 31.58 | 14.23 |
| Zm00001d022243_P002 | Maize | nucleus | 25.44 | 13.88 |
| Zm00001d012570_P002 | Maize | extracellular | 19.3 | 13.5 |
| AT3G13570.1 | Thale cress | nucleus | 30.7 | 13.36 |
| Zm00001d029256_P002 | Maize | nucleus | 26.32 | 12.24 |
| AT1G55310.3 | Thale cress | nucleus | 30.7 | 11.71 |
| PGSC0003DMT400081835 | Potato | nucleus | 25.44 | 11.69 |
| Solyc01g005820.2.1 | Tomato | nucleus | 25.44 | 11.51 |
| PGSC0003DMT400010908 | Potato | nucleus | 27.19 | 11.07 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 26.32 | 10.49 |
| Zm00001d006906_P010 | Maize | mitochondrion | 21.05 | 9.52 |
| Zm00001d022189_P002 | Maize | nucleus | 19.3 | 8.66 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 20.18 | 7.99 |
| Zm00001d052803_P004 | Maize | nucleus | 21.05 | 7.97 |
| Zm00001d031269_P002 | Maize | nucleus | 21.93 | 7.27 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 21.93 | 6.78 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 12.28 | 3.24 |
Protein Annotations
| EnsemblPlants:Zm00001d010176_P001 | EnsemblPlants:Zm00001d010176_T001 | EnsemblPlantsGene:Zm00001d010176 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF11 | ProteinID:AQK93581.1 |
| UniParc:UPI0008435A6F | UniProt:A0A1D6FPM8 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr8:+:103051255..103056161
Molecular Weight (calculated)
12740.3 Da
IEP (calculated)
9.689
GRAVY (calculated)
-0.618
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGKMLLGRK IAVVFVEENR KKPSDMRARE KISGRGRSYD GRLRSRSPGL YDSPRVDHGP KAEATRQHFS ESTIQGYLNV YYVGIPKSLM SEVSCEPMNL
101: DVGRADQCAG AYVV
101: DVGRADQCAG AYVV
001: MDPADAADAK HHMDGYLLLG RELTVVFAEE NRKKPTEMRA RERGGGSRFR DRRRTPPRYY SRSRSPPPRR GRSRSRSGDY YSPPPRRHHP RSISPREERY
101: DGRRSYSRSP ASDGSRGRSL TPVRGKSRSL SPSPRRSISR SPRRSRSPSP KRNRSVSPRR SISRSPRRSR SPRRSRRSYT PEPARSRSQS PHGGQYDEDR
201: SPSQ
101: DGRRSYSRSP ASDGSRGRSL TPVRGKSRSL SPSPRRSISR SPRRSRSPSP KRNRSVSPRR SISRSPRRSR SPRRSRRSYT PEPARSRSQS PHGGQYDEDR
201: SPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.